Funannotate: fix for missing env var (galaxyproject#5276)

* Funannotate: fix missing env var * add ref to issue
bebatut · Apr 25, 2023 · 2c4f817 · 2c4f817
1 parent 0a3abec
commit 2c4f817
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diff --git a/tools/funannotate/funannotate_annotate.xml b/tools/funannotate/funannotate_annotate.xml
@@ -8,6 +8,12 @@
     </requirements>
     <version_command>funannotate check --show-versions</version_command>
     <command><![CDATA[
+## Needed by some subprocess invoked internally
+## https://github.com/nextgenusfs/funannotate/issues/905
+export FUNANNOTATE_DB='$database.fields.path'
+
+&&
+
 funannotate annotate
 
 #if $input.input_type == 'gbk'

diff --git a/tools/funannotate/macros.xml b/tools/funannotate/macros.xml
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@TOOL_VERSION@">1.8.15</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
 
     <xml name="requirements">
         <requirement type="package" version="@TOOL_VERSION@">funannotate</requirement>