SCRUM-4190 make xenbase and human gaf file load #1709
Closed
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
oblodgett
reviewed
Nov 7, 2024
| @@ -168,7 +168,7 @@ from bulkload | |||
| where name = 'RGD GAF'; | |||
|
|
|||
| insert into bulkurlload (id, bulkloadurl) | |||
| select id, 'https://www.ebi.ac.uk/gxa/species/Homo_sapiens/sitemap.xml?allEntries=true' | |||
| select id, 'https://download.alliancegenome.org/2.3.0/GAF/HUMAN/GAF_HUMAN_1.gaf' | |||
There was a problem hiding this comment.
You can't change a migration once its been applied. You will need to create a new migration. Unless you plan to change this manually (db update) on alpha.
There was a problem hiding this comment.
Plus this is looking more and more like a FMS load vs a URL load. Given that they latest version of this file is: https://download.alliancegenome.org/7.4.0/GAF/HUMAN/GAF_HUMAN_0.gaf.gz this needs to be turned into a FMS load so that we will always get the latest version of the file.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.