SCRUM-4190 fix checkstyle, create new flyway script

alliance-genome · Nov 7, 2024 · 427f1ed · 427f1ed
1 parent ade53c5
commit 427f1ed
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Showing 3 changed files with 5 additions and 2 deletions.
diff --git a/...n/java/org/alliancegenome/curation_api/jobs/executors/GeneOntologyAnnotationExecutor.java b/...n/java/org/alliancegenome/curation_api/jobs/executors/GeneOntologyAnnotationExecutor.java
@@ -60,7 +60,7 @@ public void execLoad(BulkLoadFileHistory bulkLoadFileHistory) throws IOException
 				String orgID = token[0];
 				String modID = token[1];
 				String goID = token[4];
-				if (abbr.equalsIgnoreCase(orgID) || (abbr.equals("HUMAN") && orgID.equals("RGD"))) {
+				if (abbr.equalsIgnoreCase(orgID) || abbr.equals("HUMAN") && orgID.equals("RGD")) {
 					List<String> goIDs = uiMap.computeIfAbsent(modID, list -> new ArrayList<>());
 					goIDs.add(goID);
 				}

diff --git a/src/main/resources/db/migration/v0.38.0.2__gaf-load.sql b/src/main/resources/db/migration/v0.38.0.2__gaf-load.sql
@@ -168,7 +168,7 @@ from bulkload
 where name = 'RGD GAF';
 
 insert into bulkurlload (id, bulkloadurl)
-select id, 'https://download.alliancegenome.org/2.3.0/GAF/HUMAN/GAF_HUMAN_1.gaf'
+select id, 'https://www.ebi.ac.uk/gxa/species/Homo_sapiens/sitemap.xml?allEntries=true'
 from bulkload
 where name = 'HUMAN GAF';
 

diff --git a/src/main/resources/db/migration/v0.38.0.3__gaf-load.sql b/src/main/resources/db/migration/v0.38.0.3__gaf-load.sql
@@ -0,0 +1,3 @@
+update bulkurlload set bulkloadurl = 'https://download.alliancegenome.org/2.3.0/GAF/HUMAN/GAF_HUMAN_1.gaf'
+where id = (select id from bulkload where name = 'HUMAN GAF');
+
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,3 @@
		update bulkurlload set bulkloadurl = 'https://download.alliancegenome.org/2.3.0/GAF/HUMAN/GAF_HUMAN_1.gaf'
		where id = (select id from bulkload where name = 'HUMAN GAF');