Update Reclustering.Rmd

adrientaudiere · Mar 13, 2023 · 080e398 · 080e398
1 parent d11f0e9
commit 080e398
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/vignettes/Reclustering.Rmd b/vignettes/Reclustering.Rmd
@@ -24,13 +24,14 @@ library(MiscMetabar)
 ```{r}
 data(data_fungi_sp_known)
 otu <- asv2otu(data_fungi_sp_known, method = "clusterize")
-otu_vs <- asv2otu(data_fungi_sp_known, method = "vsearch")
+#otu_vs <- asv2otu(data_fungi_sp_known, method = "vsearch")
 ```
 
+The vsearch method requires the installation of [Vsearch](https://github.com/torognes/vsearch).
+
 ```{r}
 summary_plot_pq(data_fungi_sp_known)
 summary_plot_pq(otu)
-summary_plot_pq(otu_vs)
 ```
 
 ## Using lulu algorithm (https://www.nature.com/articles/s41467-017-01312-x)