correction paper

README.Rmd

@@ -6,6 +6,7 @@ always_allow_html: yes
 <a href="https://zenodo.org/badge/latestdoi/268765075"><img src="https://zenodo.org/badge/268765075.svg" alt="DOI"></a>
 
 <!-- README.md is generated from README.Rmd. Please edit that file -->
+<!-- devtools::build_readme() -->
 
 ```{r, include = FALSE}
 knitr::opts_chunk$set(

README.md

@@ -24,7 +24,7 @@ install.packages("devtools")
 devtools::install_github("adrientaudiere/MiscMetabar")
 #> 
 #> ── R CMD build ─────────────────────────────────────────────────────────────────
-#> * checking for file ‘/tmp/RtmpS7QuI6/remotes171d34a266125/adrientaudiere-MiscMetabar-b56337f/DESCRIPTION’ ... OK
+#> * checking for file ‘/tmp/RtmpoPvlBR/remotes598b5411659a5/adrientaudiere-MiscMetabar-bb84b7c/DESCRIPTION’ ... OK
 #> * preparing ‘MiscMetabar’:
 #> * checking DESCRIPTION meta-information ... OK
 #> * checking for LF line-endings in source and make files and shell scripts
@@ -38,14 +38,6 @@ You can install the developement version from
 ``` r
 install.packages("devtools")
 devtools::install_github("adrientaudiere/MiscMetabar", ref = "dev")
-#> 
-#> ── R CMD build ─────────────────────────────────────────────────────────────────
-#> * checking for file ‘/tmp/RtmpS7QuI6/remotes171d3c7c880e/adrientaudiere-MiscMetabar-dc01044/DESCRIPTION’ ... OK
-#> * preparing ‘MiscMetabar’:
-#> * checking DESCRIPTION meta-information ... OK
-#> * checking for LF line-endings in source and make files and shell scripts
-#> * checking for empty or unneeded directories
-#> * building ‘MiscMetabar_0.3.tar.gz’
 ```
 
 ## Some use of MiscMetabar

paper.md

@@ -67,46 +67,32 @@ MiscMetabar is already used by scientific communities in different teams ([@Plei
 
 
 
+# Acknowledgements
 
 
 
 
 
 
 
-# Citations
 
-Citations to entries in paper.bib should be in
-[rMarkdown](http://rmarkdown.rstudio.com/authoring_bibliographies_and_citations.html)
-format.
 
-If you want to cite a software repository URL (e.g. something on GitHub without a preferred
-citation) then you can do it with the example BibTeX entry below for @fidgit.
 
-For a quick reference, the following citation commands can be used:
-- `@author:2001`  ->  "Author et al. (2001)"
-- `[@author:2001]` -> "(Author et al., 2001)"
-- `[@author1:2001; @author2:2001]` -> "(Author1 et al., 2001; Author2 et al., 2002)"
 
-# Figures
 
-<--!
 
-Figures can be included like this:
-![Caption for example figure.\label{fig:example}](figure.png)
-and referenced from text using \autoref{fig:example}.
 
-Figure sizes can be customized by adding an optional second parameter:
-![Caption for example figure.](figure.png){ width=20% }
 
--->
 
-# Acknowledgements
 
-We acknowledge contributions from Brigitta Sipocz, Syrtis Major, and Semyeong
-Oh, and support from Kathryn Johnston during the genesis of this project.
 
-# References 
 
 
-Huang R, Soneson C, Ernst FGM et al. TreeSummarizedExperiment: a S4 class for data with hierarchical structure [version 2; peer review: 3 approved]. F1000Research 2021, 9:1246 (https://doi.org/10.12688/f1000research.26669.2) 
+For a quick reference, the following citation commands can be used:
+- `@author:2001`  ->  "Author et al. (2001)"
+- `[@author:2001]` -> "(Author et al., 2001)"
+- `[@author1:2001; @author2:2001]` -> "(Author1 et al., 2001; Author2 et al., 2002)"
+
+
+
+

vignettes/MiscMetabar.Rmd

@@ -30,7 +30,7 @@ summary_plot_pq(data_fungi)
 
 ### Create an interactive table of the tax_table
 
-```{r}
+```{r results="asis"}
 data("GlobalPatterns")
 tax_datatable(subset_taxa(
   GlobalPatterns,