Example Input Files

Sample input files to demo running FastProject with. Companion to the tutorial here.

Data from Patel and Tirosh et al 2014

Download Files Here

*Note: Additional Files Required: See the README for instructions on where to download

Zip Contents

• README.txt: Additional Instructions
• run.sh: Bash script file showing how to call FastProject (For OSX/Linux)
• run.bat: Windows Batch file showing how to call FastProject (For Windows)
• data/
  • expression_matrix.txt: Gene expression matrix
  • precomputed_signatures.txt: Meta-data (precomputd signatures) for each sample
  • published_signatures/
    • cell_cycle_Tirosh.gmt: Cell-cycle signatures in GMT format
    • netPath_ud.txt: Signatures from NetPath in TXT format
    • tcga_sigs.txt: Signatures from TCGA in TXT format
    • tirosh_extras.gmt: Additional signatures in GMT format