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Merge report_pr_changes into track_lineage_changes #1296

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merged 40 commits into from
Nov 28, 2023

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Merge report_pr_changes into track_lineage_changes so that the comparison scripts are present in this test branch.

dachengx and others added 30 commits September 29, 2023 05:44
* Try to fix bug in RTD

* Fix bug

* Debug

* Fix bug

* Install graphviz to use dot
* add pad-array protocol

* add test

* satisfy pep8

* change location of protocol to right place

* fix corruption of file

* accidentally deleted a file, adding it back

---------

Co-authored-by: [email protected] <[email protected]>
Co-authored-by: Luis Sanchez <[email protected]>
* Update HISTORY.md

* Bump version: 2.1.3 → 2.1.4
* som peaklet classification

* Updating plugin, this needs straxen PR Waveform attributes #745

* update plugin, this works now

* remove som type and propagate som classification up to peaks

* do not classify type 0

* Fix issue with array sisize

* add som_type

* Update peaklet_classification_som.py

fix error in data_to_log_deciles

* fix som_type issue

* update model + some function details

* new file + new type 3 added

* separate som_plugin from main pipeline

* Add tests to produce input vectors

* current status of plugin, detach plugin before we are ready fro review

* start making new context

* fix plugin and context

* clean up plugin

* Update peaklet_classification_som.py

Comply with some of the pep8 suggestions

* conform to pep8 style

* Update peaklet_classification_som.py

missed a function with upper cases

* Update peaklet_classification_som.py

pep8 space

---------

Co-authored-by: ahiguera-mx <[email protected]>
* Update HISTORY.md

* Bump version: 2.1.4 → 2.1.5
The current way to enable strax logging to debug level did not work, as it was setting the level only for the daq logs. Now it correctly sets the level for the root logger. 
Thanks to @jmosbacher and @WenzDaniel

Co-authored-by: Dacheng Xu <[email protected]>
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.4 to 2.1.0.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](urllib3/urllib3@2.0.4...2.1.0)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.0 to 4.7.1.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4.7.0...v4.7.1)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Dacheng Xu <[email protected]>
Bumps [supercharge/mongodb-github-action](https://github.com/supercharge/mongodb-github-action) from 1.9.0 to 1.10.0.
- [Release notes](https://github.com/supercharge/mongodb-github-action/releases)
- [Changelog](https://github.com/supercharge/mongodb-github-action/blob/main/CHANGELOG.md)
- [Commits](supercharge/mongodb-github-action@1.9.0...1.10.0)

---
updated-dependencies:
- dependency-name: supercharge/mongodb-github-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Dacheng Xu <[email protected]>
Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Dacheng Xu <[email protected]>
…1290)

* Update README, remove code style checking, add more ignore commits

* remove blank line
updates:
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0)
- [github.com/psf/black: 23.7.0 → 23.11.0](psf/black@23.7.0...23.11.0)
- [github.com/pre-commit/mirrors-mypy: v1.5.1 → v1.7.0](pre-commit/mirrors-mypy@v1.5.1...v1.7.0)
Use pre-commit for continuous integration also for scripts
@JYangQi00 JYangQi00 merged commit 0974ee4 into track_lineage_changes Nov 28, 2023
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6 participants