Move remaining global post scripts over from UPP

Several scripts currently located under NOAA-EMC/UPP are only used for global, so
they have been moved within global-workflow so they can be managed by the global-
workflow team.

Fixes NOAA-EMC#769

.gitignore

@@ -107,13 +107,10 @@ jobs/JGFS_ATMOS_WAFS_GRIB2
 jobs/JGFS_ATMOS_WAFS_GRIB2_0P25
 jobs/JGLOBAL_ATMOS_ANALYSIS
 jobs/JGLOBAL_ATMOS_ANALYSIS_CALC
-jobs/JGLOBAL_ATMOS_NCEPPOST
-jobs/JGLOBAL_ATMOS_POST_MANAGER
 # scripts symlinks
 scripts/exemcsfc_global_sfc_prep.sh
 scripts/exgdas_atmos_chgres_forenkf.sh
 scripts/exgdas_atmos_gldas.sh
-scripts/exgdas_atmos_nceppost.sh
 scripts/exgdas_atmos_verfozn.sh
 scripts/exgdas_atmos_verfrad.sh
 scripts/exgdas_atmos_vminmon.sh
@@ -132,23 +129,18 @@ scripts/exgfs_atmos_wafs_grib2.sh
 scripts/exgfs_atmos_wafs_grib2_0p25.sh
 scripts/exglobal_atmos_analysis.sh
 scripts/exglobal_atmos_analysis_calc.sh
-scripts/exglobal_atmos_pmgr.sh
 scripts/exglobal_diag.sh
 # ush symlinks
 ush/calcanl_gfs.py
 ush/calcinc_gfs.py
 ush/chgres_cube.sh
 ush/emcsfc_ice_blend.sh
 ush/emcsfc_snow.sh
-ush/fix_precip.sh
 ush/fv3gfs_driver_grid.sh
-ush/fv3gfs_dwn_nems.sh
 ush/fv3gfs_filter_topo.sh
 ush/fv3gfs_make_grid.sh
 ush/fv3gfs_make_orog.sh
 ush/getncdimlen
-ush/gfs_nceppost.sh
-ush/gfs_transfer.sh
 ush/gldas_archive.sh
 ush/gldas_forcing.sh
 ush/gldas_get_data.sh
@@ -160,20 +152,17 @@ ush/global_chgres_driver.sh
 ush/global_cycle.sh
 ush/global_cycle_driver.sh
 ush/gsi_utils.py
-ush/link_crtm_fix.sh
 ush/minmon_xtrct_costs.pl
 ush/minmon_xtrct_gnorms.pl
 ush/minmon_xtrct_reduct.pl
 ush/mkwfsgbl.sh
-ush/mod_icec.sh
 ush/ozn_xtrct.sh
 ush/radmon_ck_stdout.sh
 ush/radmon_err_rpt.sh
 ush/radmon_verf_angle.sh
 ush/radmon_verf_bcoef.sh
 ush/radmon_verf_bcor.sh
 ush/radmon_verf_time.sh
-ush/trim_rh.sh
 ush/wafs_blending.sh
 ush/wafs_grib2.regrid.sh
 ush/wafs_intdsk.sh

jobs/JGLOBAL_ATMOS_NCEPPOST

@@ -0,0 +1,153 @@
+#!/bin/ksh
+set -x
+
+export RUN_ENVIR=${RUN_ENVIR:-"nco"}
+export PS4='$SECONDS + '
+date
+
+
+#############################
+# Source relevant config files
+#############################
+configs="base post"
+export EXPDIR=${EXPDIR:-$HOMEgfs/parm/config}
+config_path=${EXPDIR:-$NWROOT/gfs.${gfs_ver}/parm/config}
+for config in $configs; do
+    . $config_path/config.$config
+    status=$?
+    [[ $status -ne 0 ]] && exit $status
+done
+
+
+##########################################
+# Source machine runtime environment
+##########################################
+. $HOMEgfs/env/${machine}.env post
+status=$?
+[[ $status -ne 0 ]] && exit $status
+
+
+##############################################
+# Obtain unique process id (pid) and make temp directory
+##############################################
+export pid=${pid:-$$}
+export outid=${outid:-"LL$job"}
+export DATA=${DATA:-${DATAROOT}/${jobid:?}}
+mkdir -p $DATA
+cd $DATA
+
+
+##############################################
+# Run setpdy and initialize PDY variables
+##############################################
+export cycle="t${cyc}z"
+setpdy.sh
+. ./PDY
+
+
+##############################################
+# Determine Job Output Name on System
+##############################################
+export pgmout="OUTPUT.${pid}"
+export pgmerr=errfile
+
+####################################
+# Specify version numbers
+####################################
+export crtm_ver=${post_crtm_ver:-v2.2.6}
+export gfs_ver=${gfs_ver:-v15.0.0}
+export hwrf_ver=${hwrf_ver:-v11.0.5}
+export g2tmpl_ver=${g2tmpl_ver:-v1.5.0}
+
+##############################################
+# Set variables used in the exglobal script
+##############################################
+export CDATE=${CDATE:-${PDY}${cyc}}
+export CDUMP=${CDUMP:-${RUN:-"gfs"}}
+export COMPONENT=${COMPONENT:-atmos}
+
+
+##############################################
+# Begin JOB SPECIFIC work
+##############################################
+export APRUNP=${APRUN:-$APRUN_NP}
+export RERUN=${RERUN:-NO}
+export HOMECRTM=${HOMECRTM:-${NWROOT}/lib/crtm/${crtm_ver}}
+export FIXCRTM=${CRTM_FIX:-${HOMECRTM}/fix}
+export PARMpost=${PARMpost:-$HOMEgfs/parm/post}
+export INLINE_POST=${WRITE_DOPOST:-".false."}
+
+export COMIN=${COMIN:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
+export COMOUT=${COMOUT:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
+
+[[ ! -d $COMOUT ]] && mkdir -m 775 -p $COMOUT
+
+if [ $RUN = gfs ];then
+  export FHOUT_PGB=${FHOUT_GFS:-3} #Output frequency of gfs pgb file at 1.0 and 0.5 deg.
+fi
+if [ $RUN = gdas ]; then
+  export IGEN_GFS="gfs_avn"
+  export IGEN_ANL="anal_gfs"
+  export IGEN_FCST="gfs_avn"
+  export IGEN_GDAS_ANL="anal_gdas"
+  export FHOUT_PGB=${FHOUT:-1} #Output frequency of gfs pgb file at 1.0 and 0.5 deg.
+fi
+
+if [ $GRIBVERSION = grib2 ]; then
+  export IGEN_ANL="anal_gfs"
+  export IGEN_FCST="gfs_avn"
+  export IGEN_GFS="gfs_avn"
+fi
+
+#######################################
+# Specify Restart File Name to Key Off
+#######################################
+export restart_file=$COMIN/${RUN}.t${cyc}z.logf
+
+####################################
+# Specify Timeout Behavior of Post
+#
+# SLEEP_TIME - Amount of time to wait for
+#              a restart file before exiting
+# SLEEP_INT  - Amount of time to wait between
+#              checking for restart files
+####################################
+export SLEEP_TIME=900
+export SLEEP_INT=5
+
+
+###############################################################
+# Run relevant exglobal script
+env
+msg="HAS BEGUN on `hostname`"
+postmsg "$msg"
+$LOGSCRIPT
+
+
+$SCRgfs/ex${RUN}_atmos_nceppost.sh
+status=$?
+[[ $status -ne 0 ]] && exit $status
+
+##############################################
+# End JOB SPECIFIC work
+##############################################
+
+##############################################
+# Final processing
+##############################################
+if [ -e "$pgmout" ]; then
+  cat $pgmout
+fi
+
+msg="ENDED NORMALLY."
+postmsg "$msg"
+
+
+##########################################
+# Remove the Temporary working directory
+##########################################
+cd $DATAROOT
+[[ $KEEPDATA = "NO" ]] && rm -rf $DATA
+
+date
+exit 0

jobs/JGLOBAL_ATMOS_POST_MANAGER

@@ -0,0 +1,104 @@
+#!/bin/sh
+
+########################################
+# GFS post manager
+########################################
+
+export RUN_ENVIR=${RUN_ENVIR:-"nco"}
+export PS4='$SECONDS + '
+date
+
+#############################
+# Source relevant config files
+#############################
+set -x
+configs="base post"
+export EXPDIR=${EXPDIR:-$HOMEgfs/parm/config}
+config_path=${EXPDIR:-$NWROOT/gfs.${gfs_ver}/parm/config}
+for config in $configs; do
+    . $config_path/config.$config
+    status=$?
+    [[ $status -ne 0 ]] && exit $status
+done
+
+
+##########################################
+# Source machine runtime environment
+##########################################
+. $HOMEgfs/env/${machine}.env post
+status=$?
+[[ $status -ne 0 ]] && exit $status
+
+set -xue
+# #### 07/30/1999 ###################
+# SET SHELL PROCESSING VARIABLES
+# ###################################
+export PS4='$SECONDS + ' 
+date
+
+####################################
+# Specify NET and RUN Name and model
+####################################
+export NET=${NET:-gfs}
+export RUN=${RUN:-gfs}
+export COMPONENT=${COMPONENT:-atmos}
+
+#################################### 
+# obtain unique process id (pid) and make temp directories
+####################################
+export pid=${pid:-$$}
+export DATA=${DATA:-${DATAROOT}/${jobid:?}}
+mkdir $DATA
+cd $DATA 
+
+####################################
+# Determine Job Output Name on System
+####################################
+export outid="LL$job"
+export jobid="${outid}.o${pid}"
+export pgmout="OUTPUT.${pid}"
+
+####################################
+# Specify version numbers
+####################################
+export gfs_ver=${gfs_ver:-v15.0.0}
+
+####################################
+# Specify Execution Areas
+####################################
+export HOMEgfs=${HOMEgfs:-${NWROOT}/gfs.${gfs_ver}}
+export EXECgfs=${HOMEgfs:-$HOMEgfs/exec}
+export FIXgfs=${HOMEgfs:-$HOMEgfs/fix}
+export PARMgfs=${HOMEgfs:-$HOMEgfs/parm}
+export USHgfs=${HOMEgfs:-$HOMEgfs/ush}
+
+###########################
+# Set up EXT variable
+###########################
+export EXT_FCST=NO
+
+###################################
+# Set up the UTILITIES
+###################################
+# export HOMEutil=${HOMEutil:-/nw${envir}/util.${util_ver}}
+# export utilscript=${utilscript:-$HOMEutil/ush}
+# export utilexec=${utilexec:-$HOMEutil/exec}
+
+###########################################
+# Run setpdy and initialize PDY variables
+###########################################
+export cycle=t${cyc}z
+setpdy.sh
+. ./PDY
+
+export ROTDIR=${ROTDIR:-${COMROOT:?}/$NET/$envir}
+export COMIN=${COMIN:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
+export COMOUT=${COMOUT:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
+
+
+########################################################
+# Execute the script.
+$HOMEgfs/scripts/exglobal_atmos_pmgr.sh
+########################################################
+
+date