Code

dbGaP application views for PIs#599

Code

Merged

amstilp merged 41 commits intomainUW-GAC/primed-django:mainfrom feature/dbgap-application-views-for-pisUW-GAC/primed-django:feature/dbgap-application-views-for-pisCopy head branch name to clipboardJun 18, 2024

+3,795-343

Commits

Commits on Jun 6, 2024

• Allow a dbGaP PI to view their dbGaP application detail view

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• Allow dbGaP PIs to see DAR snapshots for their application

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• Reduce database queries in dbGaP Detail views

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• Allow dbGaP PIs to see the DAR history page

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Commits on Jun 7, 2024

• Show PI name instead of username in dbGaP application

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• Add link to PI user profile on dbGaP application page

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• Track collaborators associated with a dbGaP application

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• Switch dbGaPApplicationDetail view to use MultiTableMixin

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• Add a table to show User, account, and group membership

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• Add a table of collaborators to the dbGaPApplicationDetail page

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• Add form and view to update dbGaP application collaborators

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• Change collaborators widget to autocomplete selector

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Commits on Jun 10, 2024

• Start reworking audit namespaces

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Commits on Jun 11, 2024

• Move dbGaP audit code into its own subdirectory

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Commits on Jun 12, 2024

• Add skeleton classes for collaborator audits

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• Add initial auditing classes for dbGaPCollaboratorAudit

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• Rename access audit templates for clarity

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Commits on Jun 13, 2024

• Change collaborator to user in audit result classes

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• Add definition and tests for dbGaPCollaboratorAudit view

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• Add a method to audit an application and a group

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• Dispatch audit based on object type using an internal method

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• Use case-insensitive strings when looking up objects by email

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• Add view to resolve collaborator audits

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• Use admins group in settings file in audits

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• Add tests for collaborator audit result classes

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Commits on Jun 14, 2024

• Limit the number of pytest-xdist workers to 4

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• Add tests for the dbGaPCollaboratorAuditTable

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• Run the collaborator audit as part of the run_dbgap_audit command

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• Clean up test coverage

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• Allow collaborators on dbGaP applications to see info

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• Update language on templates

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• Add collaborator audit to navbar

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• Add phenotype inventory link to navbar

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• Add tests for collaborator links on dbGaPApplicationDetail view

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Commits on Jun 18, 2024

• Add dbGaP application info to user profile

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• Clean up test coverage

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• Fix url in run_collaborative_analysis_audit

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• Fix accordion ids and collapse targets

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• Add statement when there are no associated dbGaP apps

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• Allow staff view users to see data access mechanisms

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• Add CDSA "coming soon" to profile page

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