Merge pull request #339 from UCD-SERG/328/CRAN-resubmission/remove-os…

…f-tests 328/cran resubmission/remove osf tests
UCD-SERG · Jan 23, 2025 · 78c3ea6 · 78c3ea6
2 parents f8dca17 + 663ea24
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Type: Package
 Package: serocalculator
 Title: Estimating Infection Rates from Serological Data
-Version: 1.2.0.9026
+Version: 1.2.0.9027
 Authors@R: c(
     person("Peter", "Teunis", , "[email protected]", role = c("aut", "cph"),
            comment = "Author of the method and original code."),

diff --git a/NEWS.md b/NEWS.md
@@ -38,6 +38,8 @@
 ## Internal changes
 * Updated documentation to align with previous CRAN feedback (#328)
 
+* Updated tests to use internal testing datasets instead of external links (#328)
+
 * Updated `test-coverage.yml` GHA action to current `r-lib` standard (#330)
 
 * Change default pipe setting (#312)

diff --git a/tests/testthat/_snaps/as_curve_params.md b/tests/testthat/_snaps/as_curve_params.md
diff --git a/tests/testthat/_snaps/as_noise_params.md b/tests/testthat/_snaps/as_noise_params.md
@@ -3,55 +3,28 @@
     Code
       test_data
     Output
-      # A tibble: 16 x 7
-         antigen_iso Country    y.low   eps    nu  y.high Lab  
-         <chr>       <fct>      <dbl> <dbl> <dbl>   <dbl> <fct>
-       1 HlyE_IgA    Bangladesh 0.376 0.280  2.60 5000000 CHRF 
-       2 HlyE_IgA    Ghana      0.179 0.240  2.60 5000000 MGH  
-       3 HlyE_IgA    Nepal      0.853 0.238  2.60 5000000 DH   
-       4 HlyE_IgA    Pakistan   0.508 0.279  2.60 5000000 AKU  
-       5 HlyE_IgG    Bangladesh 0.787 0.306  2.36 5000000 CHRF 
-       6 HlyE_IgG    Ghana      0.645 0.164  2.36 5000000 MGH  
-       7 HlyE_IgG    Nepal      1.89  0.128  2.36 5000000 DH   
-       8 HlyE_IgG    Pakistan   1.59  0.146  2.36 5000000 AKU  
-       9 LPS_IgA     Bangladesh 0.660 0.299  2.14 5000000 CHRF 
-      10 LPS_IgA     Ghana      0.861 0.163  2.14 5000000 MGH  
-      11 LPS_IgA     Nepal      1.79  0.115  2.14 5000000 DH   
-      12 LPS_IgA     Pakistan   5.13  0.246  2.14 5000000 AKU  
-      13 LPS_IgG     Bangladesh 0.992 0.298  3.24 5000000 CHRF 
-      14 LPS_IgG     Ghana      0.885 0.195  3.24 5000000 MGH  
-      15 LPS_IgG     Nepal      0.647 0.179  3.24 5000000 DH   
-      16 LPS_IgG     Pakistan   4.84  0.273  3.24 5000000 AKU  
+      # A tibble: 4 x 7
+        antigen_iso Country  y.low   eps    nu  y.high Lab  
+        <chr>       <chr>    <dbl> <dbl> <dbl>   <dbl> <chr>
+      1 HlyE_IgA    Pakistan 0.508 0.279  2.60 5000000 AKU  
+      2 HlyE_IgG    Pakistan 1.59  0.146  2.36 5000000 AKU  
+      3 LPS_IgA     Pakistan 5.13  0.246  2.14 5000000 AKU  
+      4 LPS_IgG     Pakistan 4.84  0.273  3.24 5000000 AKU  
 
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