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fix: add renku cli to PATH in rstudio #232

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merged 2 commits into from
Mar 18, 2022
Merged

fix: add renku cli to PATH in rstudio #232

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08a0d5d
fix: add renku cli to PATH in rstudio
olevski Mar 17, 2022
59861d0
chore(ci): use dockerhub org secrets
olevski Mar 17, 2022
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36 changes: 18 additions & 18 deletions .github/workflows/build_and_push_to_docker.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -24,8 +24,8 @@ jobs:
- name: Docker Login
uses: Azure/docker-login@v1
with:
username: ${{ secrets.DOCKER_USERNAME }}
password: ${{ secrets.DOCKER_PASSWORD }}
username: ${{ secrets.RENKU_DOCKER_USERNAME }}
password: ${{ secrets.RENKU_DOCKER_PASSWORD }}

- uses: actions/checkout@v2
- name: Build renku project python-based docker images
Expand Down Expand Up @@ -78,8 +78,8 @@ jobs:
- name: Docker Login
uses: Azure/docker-login@v1
with:
username: ${{ secrets.DOCKER_USERNAME }}
password: ${{ secrets.DOCKER_PASSWORD }}
username: ${{ secrets.RENKU_DOCKER_USERNAME }}
password: ${{ secrets.RENKU_DOCKER_PASSWORD }}

- uses: actions/checkout@v2
- name: Build renku project python-based docker image extensions
Expand Down Expand Up @@ -147,8 +147,8 @@ jobs:
- name: Docker Login
uses: Azure/docker-login@v1
with:
username: ${{ secrets.DOCKER_USERNAME }}
password: ${{ secrets.DOCKER_PASSWORD }}
username: ${{ secrets.RENKU_DOCKER_USERNAME }}
password: ${{ secrets.RENKU_DOCKER_PASSWORD }}

- uses: actions/checkout@v2
- name: Build renku project python-based docker image extensions
Expand Down Expand Up @@ -207,8 +207,8 @@ jobs:
- name: Docker Login
uses: Azure/docker-login@v1
with:
username: ${{ secrets.DOCKER_USERNAME }}
password: ${{ secrets.DOCKER_PASSWORD }}
username: ${{ secrets.RENKU_DOCKER_USERNAME }}
password: ${{ secrets.RENKU_DOCKER_PASSWORD }}

- uses: actions/checkout@v2
- name: Build renku project python-based docker image extensions
Expand Down Expand Up @@ -254,8 +254,8 @@ jobs:
- name: Docker Login
uses: Azure/docker-login@v1
with:
username: ${{ secrets.DOCKER_USERNAME }}
password: ${{ secrets.DOCKER_PASSWORD }}
username: ${{ secrets.RENKU_DOCKER_USERNAME }}
password: ${{ secrets.RENKU_DOCKER_PASSWORD }}

- uses: actions/checkout@v2
- name: Build renku project python-based docker image extensions
Expand All @@ -282,8 +282,8 @@ jobs:
- name: Docker Login
uses: Azure/docker-login@v1
with:
username: ${{ secrets.DOCKER_USERNAME }}
password: ${{ secrets.DOCKER_PASSWORD }}
username: ${{ secrets.RENKU_DOCKER_USERNAME }}
password: ${{ secrets.RENKU_DOCKER_PASSWORD }}

- uses: actions/checkout@v2
- name: Build renku project python-based docker image for batch execution
Expand Down Expand Up @@ -316,8 +316,8 @@ jobs:
- name: Docker Login
uses: Azure/docker-login@v1
with:
username: ${{ secrets.DOCKER_USERNAME }}
password: ${{ secrets.DOCKER_PASSWORD }}
username: ${{ secrets.RENKU_DOCKER_USERNAME }}
password: ${{ secrets.RENKU_DOCKER_PASSWORD }}

- uses: actions/checkout@v2
- name: Build renku project julia docker image extensions
Expand Down Expand Up @@ -362,8 +362,8 @@ jobs:
- name: Docker Login
uses: Azure/docker-login@v1
with:
username: ${{ secrets.DOCKER_USERNAME }}
password: ${{ secrets.DOCKER_PASSWORD }}
username: ${{ secrets.RENKU_DOCKER_USERNAME }}
password: ${{ secrets.RENKU_DOCKER_PASSWORD }}

- uses: actions/checkout@v2
- name: Build renku project rocker docker images
Expand Down Expand Up @@ -416,8 +416,8 @@ jobs:
- name: Docker Login
uses: Azure/docker-login@v1
with:
username: ${{ secrets.DOCKER_USERNAME }}
password: ${{ secrets.DOCKER_PASSWORD }}
username: ${{ secrets.RENKU_DOCKER_USERNAME }}
password: ${{ secrets.RENKU_DOCKER_PASSWORD }}

- uses: actions/checkout@v2
- name: Build renku project bioconductor docker images
Expand Down
2 changes: 1 addition & 1 deletion docker/r/Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@ ENV CONDA_PATH /opt/conda
SHELL [ "/bin/bash", "-c" ]

# prepend conda and local/bin to PATH
ENV PATH ${HOME}/.local/bin:${CONDA_PATH}/bin:$PATH
ENV PATH ${HOME}/.local/bin:${CONDA_PATH}/bin:${HOME}/.renku/bin:$PATH

# And set PATH for R! It doesn't read from the environment...
RUN echo "PATH=${PATH}" >> /usr/local/lib/R/etc/Renviron.site && \
Expand Down