Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fixed old SPAdes URL in Dockerfile for Unicycler 0.5.0 #1121

Closed
wants to merge 1 commit into from
Closed
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions unicycler/0.5.0/Dockerfile
Copy link
Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Image built successfully from modified Dockerfile. Unicycler runs successfully too.

Original file line number Diff line number Diff line change
Expand Up @@ -40,9 +40,9 @@ RUN apt-get update && apt-get install --no-install-recommends -y \
update-alternatives --install /usr/bin/python python /usr/bin/python3 10

# install SPAdes binary
RUN wget http://cab.spbu.ru/files/release${spadesVer}/SPAdes-${spadesVer}-Linux.tar.gz && \
RUN wget https://github.com/ablab/spades/releases/download/v${spadesVer}/SPAdes-${spadesVer}-Linux.tar.gz && \
tar -xzf SPAdes-${spadesVer}-Linux.tar.gz && \
rm -r SPAdes-${spadesVer}-Linux.tar.gz
rm -v SPAdes-${spadesVer}-Linux.tar.gz

# ncbi-blast+
# ubuntu:focal apt version of blast is old-ish (2.9.0)
Expand Down
Loading