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Bump importer version
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davmlaw committed Dec 6, 2024
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3 changes: 2 additions & 1 deletion upload/vcf/bulk_genotype_vcf_processor.py
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Expand Up @@ -50,7 +50,8 @@ class BulkGenotypeVCFProcessor(AbstractBulkVCFProcessor):
# v19. Go back to using CyVCF code as of version >= 0.30.14
# v20. Split into common/uncommon genotype collections
# v21. Support CNV, store unknown format/info fields
VCF_IMPORTER_VERSION = 21 # Change this if you make a major change to the code.
# v22. Normalize SVLEN based on settings, change gnomAD preprocessing INFO to avoid collisions
VCF_IMPORTER_VERSION = 22 # Change this if you make a major change to the code.
# Need to distinguish between no entry and 0, can't use None w/postgres command line inserts
DEFAULT_AD_FIELD = 'AD' # What CyVCF2 uses
# GL = Genotype Likelihood - used by freeBayes v1.2.0: log10-scaled likelihoods of the data given the called
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