issue #1209 - ValueError: Variant hash (96, 1456177, 185113, 688451, …

…-983) had no PK in DB!
SACGF · Dec 5, 2024 · 07b7959 · 07b7959
1 parent 93879fb
commit 07b7959
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/snpdb/variant_pk_lookup.py b/snpdb/variant_pk_lookup.py
@@ -115,7 +115,7 @@ def filter_non_reference(self, variant_hashes: Iterable[VariantHash], variant_id
     def get_variant_coordinate_hash(self, variant_coordinate: VariantCoordinate) -> VariantHash:
         """ For VCF records (needs GenomeBuild supplied) """
 
-        variant_coordinate = variant_coordinate.as_internal_symbolic(self.genome_build)
+        variant_coordinate = variant_coordinate.as_symbolic_or_explicit_according_to_size(self.genome_build)
         if self.chrom_contig_id_mappings is None:
             raise ValueError("Need to initialise w/GenomeBuild to call get_variant_coordinate_hash")
         contig_id = self.chrom_contig_id_mappings[variant_coordinate.chrom]