🐛 update path to execute run, speed-up

- also remove two slowest models
RasmussenLab · May 21, 2024 · d1ff96e · d1ff96e
1 parent abd06fd
commit d1ff96e
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diff --git a/.github/workflows/workflow_website.yaml b/.github/workflows/workflow_website.yaml
@@ -47,16 +47,16 @@ jobs:
         pip install .[docs]
     - name: Build imputation comparison website
       run: |
-        pimms-setup-imputation-comparison -f project/runs/dev_dataset_small/proteinGroups_N50/
-        cd project/runs/dev_dataset_small/proteinGroups_N50/
+        pimms-setup-imputation-comparison -f runs/alzheimer_study_2023_11_v2/
+        cd runs/alzheimer_study_2023_11_v2/
         sphinx-build -n --keep-going -b html ./ ./_build/
     - name: Archive results
       uses: actions/upload-artifact@v3
       with:
         name: example-workflow-results-${{ matrix.os }}
-        path: project/runs/dev_dataset_small/proteinGroups_N50/_build/
+        path: runs/alzheimer_study_2023_11_v2/
     - name: Publish workflow as website
       uses: peaceiris/actions-gh-pages@v4
       with:
         github_token: ${{ secrets.GITHUB_TOKEN }}
-        publish_dir: project/runs/dev_dataset_small/proteinGroups_N50/_build/
+        publish_dir: runs/alzheimer_study_2023_11_v2/_build/
diff --git a/project/config/alzheimer_study/config.yaml b/project/config/alzheimer_study/config.yaml
@@ -57,8 +57,8 @@ NAGuideR_methods:
     - IRM
     - KNN_IMPUTE
     - LLS
-    - MICE-CART
-    - MICE-NORM
+    # - MICE-CART > 1h20min on GitHub small runner
+    # - MICE-NORM ~ 1h on GitHub small runner
     - MINDET
     - MINIMUM
     - MINPROB