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@RasmussenLab

RasmussenLab

The Rasmussen group focuses on proteome and genome variation, coding variation and deep learning for integration of genomics, proteomics and clinical data.

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  1. vamb vamb Public

    Variational autoencoder for metagenomic binning

    Python 276 47

  2. MOVE MOVE Public

    MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations

    Jupyter Notebook 74 27

  3. phamb phamb Public

    Downstream processing of VAMB binning for Viral Elucidation

    Python 48 8

  4. pimms pimms Public

    Imputing proteomics data using deep learning models

    Python 21 2

  5. IntroToML IntroToML Public

    Forked from Center-for-Health-Data-Science/IntroToML

    Machine Learning course at Copenhagen University, Faculty of Health and Medical Sciences, Center for Health Data Science

    Jupyter Notebook 4

  6. vCentenarian vCentenarian Public

    Repository with supporting code and information for virome analysis of Centenarian metagenomes

    Python 3 3

Repositories

Showing 10 of 35 repositories
  • vamb Public

    Variational autoencoder for metagenomic binning

    RasmussenLab/vamb’s past year of commit activity
    Python 276 MIT 47 40 3 Updated Mar 3, 2025
  • pimms Public

    Imputing proteomics data using deep learning models

    RasmussenLab/pimms’s past year of commit activity
    Python 21 GPL-3.0 2 1 2 Updated Mar 3, 2025
  • HAPI Public

    Script to run HAPI (Haplotype-Aware Probabilistic model for Indels) to identify the CCR5delta32 deletion in ancient low coverage dna samples

    RasmussenLab/HAPI’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 23, 2025
  • njab Public

    Not just another biomarkers: Functionality for biomarker discovery

    RasmussenLab/njab’s past year of commit activity
    Python 2 MIT 1 1 0 Updated Dec 27, 2024
  • VAEs_for_biomedical_data_integration Public

    This is the repository for the paper "On the use of VAEs for biomedical data integration".

    RasmussenLab/VAEs_for_biomedical_data_integration’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 31, 2024
  • python_package Public template

    Example Python package

    RasmussenLab/python_package’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 31, 2024
  • MOVE Public

    MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations

    RasmussenLab/MOVE’s past year of commit activity
    Jupyter Notebook 74 MIT 27 13 2 Updated Oct 28, 2024
  • taxconverter Public

    Unifies the presentation of taxonomic classifiers output

    RasmussenLab/taxconverter’s past year of commit activity
    Python 2 MIT 1 1 0 Updated Oct 22, 2024
  • pan_uk_biobank_gwas_snps Public
    RasmussenLab/pan_uk_biobank_gwas_snps’s past year of commit activity
    Python 0 0 0 0 Updated Oct 11, 2024
  • extract_genotypes_workflow Public

    Call and encode genotypes based on a selection of positions.

    RasmussenLab/extract_genotypes_workflow’s past year of commit activity
    Python 0 0 0 0 Updated Oct 11, 2024
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