Merge branch 'edge' into AUTH-73-golden-RTP-examples

* edge: (194 commits)
  fix(app): clone run with RTPs from HistoricalProtocolRun (#14959)
  fix(api): Filter out `air_gap()` calls as higher-order commands (#14985)
  fix(app): fix infinitely re-rendering/never rendering firmware success toasts (#14981)
  feat(api): add option to ignore different tip presence states (#14980)
  feat(opentrons-ai-client) add input textbox to container (#14968)
  fix(app): add robotSerialNumber to proceedToRun event (#14976)
  fix(api): remove homing patch fix for right mount when a 96-channel is attached (#14975)
  feat(api-client,app,react-api-client): upload splash logo from desktop app (#14941)
  fix(robot-server): notify /runs when a non-current run is deleted (#14974)
  feature(api, robot-server): Allow fixit commands to recover from an error (#14908)
  feat(hardware-testing): enable multi sensor processing in liquid probe (#14883)
  fix(app): prevent "run again" banner from rendering after navigating away from the current run (#14973)
  refactor(components): refactor roundtab stories (#14956)
  refactor(protocol-designer): assign module slot in createFileWizard instead of modal (#14951)
  fix(app, api-client): fix choose protocol slideout issue (#14949)
  refactor(protocol-designer): tip position modal max values round down (#14972)
  feat(app): add tiprack selection step to quick transfer flow (#14950)
  ci(shared-data): install dependencies in workflow (#14958)
  fix(components): fix icon stories (#14969)
  feat(opentrons-ai-client): introduce react-markdown to chat display component (#14965)
  ...

.github/workflows/app-test-build-deploy.yaml

@@ -112,8 +112,6 @@ jobs:
       - uses: actions/setup-python@v4
         with:
           python-version: '3.10'
-      - name: 'downgrade npm version'
-        run: npm install -g npm@6
       - name: check make version
         run: make --version
       - name: 'install libudev and libsystemd'
@@ -245,8 +243,6 @@ jobs:
       - uses: actions/setup-python@v4
         with:
           python-version: '3.10'
-      - name: 'downgrade npm version'
-        run: npm install -g npm@6
       - name: check make version
         run: make --version
       - name: 'install libudev and libsystemd'

.github/workflows/components-test-build-deploy.yaml

@@ -174,10 +174,13 @@ jobs:
         with:
           node-version: '18.19.0'
           registry-url: 'https://registry.npmjs.org'
+      - name: 'install udev for usb-detection'
+        run: sudo apt-get update && sudo apt-get install libudev-dev
       - name: 'setup-js'
         run: |
           npm config set cache ./.npm-cache
           yarn config set cache-folder ./.yarn-cache
+          make setup-js
       - name: 'build typescript'
         run: make build-ts
       - name: 'build library'

.github/workflows/opentrons-ai-client-test-build-deploy.yaml

@@ -0,0 +1,78 @@
+# Run tests, build the app, and deploy it cross platform
+
+name: 'OpentronsAI client test, build, and deploy'
+
+# ToDo (kk:04/16/2024) Add build and deploy task
+
+on:
+  push:
+    paths:
+      - 'Makefile'
+      - 'opentrons-ai-client/**/*'
+      - 'components/**/*'
+      - '*.js'
+      - '*.json'
+      - 'yarn.lock'
+      - '.github/workflows/app-test-build-deploy.yaml'
+      - '.github/workflows/utils.js'
+    branches:
+      - '**'
+    tags:
+      - 'v*'
+      - 'ot3@*'
+  pull_request:
+    paths:
+      - 'Makefile'
+      - 'opentrons-ai-client/**/*'
+      - 'components/**/*'
+      - '*.js'
+      - '*.json'
+      - 'yarn.lock'
+  workflow_dispatch:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}-${{ github.ref_name != 'edge' || github.run_id}}-${{ github.ref_type != 'tag' || github.run_id }}
+  cancel-in-progress: true
+
+env:
+  CI: true
+
+jobs:
+  js-unit-test:
+    runs-on: 'ubuntu-22.04'
+    name: 'opentrons ai frontend unit tests'
+    timeout-minutes: 60
+    steps:
+      - uses: 'actions/checkout@v3'
+      - uses: 'actions/setup-node@v3'
+        with:
+          node-version: '18.19.0'
+      - name: 'install udev'
+        run: sudo apt-get update && sudo apt-get install libudev-dev
+      - name: 'set complex environment variables'
+        id: 'set-vars'
+        uses: actions/github-script@v6
+        with:
+          script: |
+            const { buildComplexEnvVars } = require(`${process.env.GITHUB_WORKSPACE}/.github/workflows/utils.js`)
+            buildComplexEnvVars(core, context)
+      - name: 'cache yarn cache'
+        uses: actions/cache@v3
+        with:
+          path: |
+            ${{ github.workspace }}/.npm-cache/_prebuild
+            ${{ github.workspace }}/.yarn-cache
+          key: js-${{ secrets.GH_CACHE_VERSION }}-${{ runner.os }}-yarn-${{ hashFiles('yarn.lock') }}
+      - name: 'setup-js'
+        run: |
+          npm config set cache ${{ github.workspace }}/.npm-cache
+          yarn config set cache-folder ${{ github.workspace }}/.yarn-cache
+          make setup-js
+      - name: 'test frontend packages'
+        run: |
+          make -C opentrons-ai-client test-cov
+      - name: 'Upload coverage report'
+        uses: codecov/codecov-action@v3
+        with:
+          files: ./coverage/lcov.info
+          flags: opentrons-ai-client

.github/workflows/performance-metrics-test-lint.yaml

@@ -0,0 +1,54 @@
+# This workflow runs lint on pull requests that touch anything in the performance-metrics directory
+
+name: 'performance-metrics test & lint'
+
+on:
+  pull_request:
+    paths:
+      - 'performance-metrics/**'
+      - '.github/workflows/performance-metrics-test-lint.yaml'
+  workflow_dispatch:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
+  cancel-in-progress: true
+
+defaults:
+  run:
+    shell: bash
+
+jobs:
+  lint:
+    name: 'performance-metrics test & lint'
+    timeout-minutes: 5
+    runs-on: 'ubuntu-latest'
+    steps:
+      - name: Checkout opentrons repo
+        uses: 'actions/checkout@v4'
+
+      - name: Setup Python
+        uses: 'actions/setup-python@v5'
+        with:
+          python-version: '3.10'
+          cache: 'pipenv'
+          cache-dependency-path: performance-metrics/Pipfile.lock
+
+      - name: "Install Python deps"
+        uses: './.github/actions/python/setup'
+        with:
+          project: 'performance-metrics'
+
+      - name: Setup
+        id: install
+        working-directory: ./performance-metrics
+        run: make setup
+
+      - name: Test
+        if: always() && steps.install.outcome == 'success' || steps.install.outcome == 'skipped'
+        working-directory: ./performance-metrics
+        run: make test
+
+      - name: Lint
+        if: always() && steps.install.outcome == 'success' || steps.install.outcome == 'skipped'
+        working-directory: ./performance-metrics
+        run: make lint

.github/workflows/shared-data-test-lint-deploy.yaml

@@ -237,7 +237,8 @@ jobs:
       - name: 'js deps'
         run: |
           npm config set cache ./.npm-cache
-          yarn config set cache-folder ./.yarn-cache 
+          yarn config set cache-folder ./.yarn-cache
+          make setup-js 
       - name: 'build typescript'
         run: make build-ts
       - name: 'build library'

.storybook/main.js

@@ -2,6 +2,7 @@ module.exports = {
   stories: [
     '../components/**/*.stories.@(js|jsx|ts|tsx)',
     '../app/**/*.stories.@(js|jsx|ts|tsx)',
+    '../opentrons-ai-client/**/*.stories.@(js|jsx|ts|tsx)',
   ],
 
   addons: [

.storybook/preview.jsx

@@ -20,7 +20,7 @@ export const parameters = {
   options: {
     storySort: {
       method: 'alphabetical',
-      order: ['Design Tokens', 'Library', 'App', 'ODD'],
+      order: ['Design Tokens', 'Library', 'App', 'ODD', 'AI'],
     },
   },
 }

abr-testing/abr_testing/google_automation/google_drive_tool.py → abr-testing/abr_testing/automation/google_drive_tool.py

@@ -1,6 +1,8 @@
 """Google Drive Tool."""
 import os
-from typing import Set, Any
+from typing import Set, Any, Optional
+import webbrowser
+import mimetypes
 from oauth2client.service_account import ServiceAccountCredentials  # type: ignore[import]
 from googleapiclient.discovery import build
 from googleapiclient.http import MediaFileUpload
@@ -14,15 +16,15 @@
 class google_drive:
     """Google Drive Tool."""
 
-    def __init__(self, credentials: Any, folder_name: str, parent_folder: Any) -> None:
+    def __init__(self, credentials: Any, folder_name: str, email: str) -> None:
         """Connects to google drive via credentials file."""
         self.scope = ["https://www.googleapis.com/auth/drive"]
         self.credentials = ServiceAccountCredentials.from_json_keyfile_name(
             credentials, self.scope
         )
         self.drive_service = build("drive", "v3", credentials=self.credentials)
-        self.folder_name = folder_name
-        self.parent_folder = parent_folder
+        self.parent_folder = folder_name
+        self.email = email
 
     def list_folder(self, delete: Any = False) -> Set[str]:
         """List folders and files in Google Drive."""
@@ -72,26 +74,37 @@ def upload_file(self, file_path: str) -> str:
         """Upload file to Google Drive."""
         file_metadata = {
             "name": os.path.basename(file_path),
-            "mimeType": "application/vnd.google-apps.folder",
-            "parents": [self.parent_folder] if self.parent_folder else "",
+            "mimeType": str(mimetypes.guess_type(file_path)[0]),
+            "parents": [self.parent_folder],
         }
-
         media = MediaFileUpload(file_path, resumable=True)
 
         uploaded_file = (
             self.drive_service.files()
             .create(body=file_metadata, media_body=media, fields="id")  # type: ignore
             .execute()
         )
-
         return uploaded_file["id"]
 
-    def upload_missing_files(self, storage_directory: str, missing_files: set) -> None:
+    def upload_missing_files(self, storage_directory: str) -> None:
         """Upload missing files to Google Drive."""
+        # Read Google Drive .json files.
+        google_drive_files = self.list_folder()
+        google_drive_files_json = [
+            file for file in google_drive_files if file.endswith(".json")
+        ]
+        # Read local directory.
+        local_files_json = set(
+            file for file in os.listdir(storage_directory) if file.endswith(".json")
+        )
+        missing_files = local_files_json - set(google_drive_files_json)
+        print(f"Missing files: {len(missing_files)}")
+        # Upload missing files.
         uploaded_files = []
         for file in missing_files:
             file_path = os.path.join(storage_directory, file)
             uploaded_file_id = google_drive.upload_file(self, file_path)
+            self.share_permissions(uploaded_file_id)
             uploaded_files.append(
                 {"name": os.path.basename(file_path), "id": uploaded_file_id}
             )
@@ -108,3 +121,31 @@ def upload_missing_files(self, storage_directory: str, missing_files: set) -> No
                 print(
                     f"File '{this_name}' was not found in the list of files after uploading."
                 )
+
+    def open_folder(self) -> Optional[str]:
+        """Open folder in web browser."""
+        folder_metadata = (
+            self.drive_service.files()
+            .get(fileId=self.parent_folder, fields="webViewLink")
+            .execute()
+        )
+        folder_link = folder_metadata.get("webViewLink")
+        if folder_link:
+            print(f"Folder link: {folder_link}")
+            webbrowser.open(
+                folder_link
+            )  # Open the folder link in the default web browser
+        else:
+            print("Folder link not found.")
+        return folder_link
+
+    def share_permissions(self, file_id: str) -> None:
+        """Share permissions with self."""
+        new_permission = {
+            "type": "user",
+            "role": "writer",
+            "emailAddress": self.email,
+        }
+        self.drive_service.permissions().create(
+            fileId=file_id, body=new_permission, transferOwnership=False  # type: ignore
+        ).execute()

abr-testing/abr_testing/google_automation/google_sheets_tool.py → abr-testing/abr_testing/automation/google_sheets_tool.py

@@ -2,6 +2,7 @@
 import gspread  # type: ignore[import]
 import socket
 import httplib2
+from datetime import datetime
 from oauth2client.service_account import ServiceAccountCredentials  # type: ignore[import]
 from typing import Dict, List, Any, Set, Tuple
 
@@ -57,6 +58,12 @@ def write_to_row(self, data: List) -> None:
         """Write data into a row in a List[] format."""
         try:
             self.row_index += 1
+            data = [
+                item.strftime("%Y/%m/%d %H:%M:%S")
+                if isinstance(item, datetime)
+                else item
+                for item in data
+            ]
             self.worksheet.insert_row(data, index=self.row_index)
         except socket.gaierror:
             pass