Merge pull request #1243 from NeurodataWithoutBorders/schema_2.2.5

CHANGELOG.md

@@ -1,12 +1,19 @@
 # PyNWB Changelog
 
+## PyNWB 1.3.2 (June 1, 2020)
+
+### Bug fixes:
+- Add support for nwb-schema 2.2.5. @rly (#1243)
+  - This schema version fixes incorrect dims and shape for `ImagingPlane.origin_coords` and `ImagingPlane.grid_spacing`,
+   and fixes incorrect dims for `TwoPhotonSeries.field_of_view`.
+
 ## PyNWB 1.3.1 (May 28, 2020)
 
 ### Bug fixes:
 - Fix bugged `Device` constructor. @rly (#1209)
 - Fix link to code of conduct page in docs. @rly (#1229)
-- Fix docs for get_type_map. @oruebel (#1233)
-- Pass file object to parent when loading namespaces (#1242)
+- Fix docs for `get_type_map`. @oruebel (#1233)
+- Pass file object to parent when loading namespaces. @NileGraddis (#1242)
 
 ### Internal improvements:
 - Update CI to use supported MacOS version. @rly (#1211)
@@ -17,17 +24,15 @@
 - Inform which unit value is actually overwritten. @yarikoptic (#1219)
 - Do not print out logging.DEBUG statements to stdout for test.py. @rly (#1240)
 - Add support for nwb-schema 2.2.4. @rly (#1213)
-  - Make `ImagingPlane.imaging_rate` optional. This moves the `imaging_rate` argument down the list of constructor
-    arguments for `ImagingPlane.__init__`. This will break existing code that calls the constructor of
-    `ImagingPlane` with at least 6 positional arguments, such that one positional argument matches `imaging_rate`.
+  - Make `ImagingPlane.imaging_rate` optional. This moves the `imaging_rate` argument down the list of constructor arguments for `ImagingPlane.__init__`. This will break existing code that calls the constructor of `ImagingPlane` with at least 6 positional arguments, such that one positional argument matches `imaging_rate`.
 
 ## PyNWB 1.3.0 (Mar. 4, 2020)
 
 ### New features:
 - Add support for nwb-schema 2.2.2. @rly (#1146)
-  - This is a large change. See the PR and schema release notes for more information: nwb-schema.readthedocs.io/en/latest/format_release_notes.html#march-2-2020
+  - This is a large change. See the PR and [schema release notes](http://nwb-schema.readthedocs.io/en/latest/format_release_notes.html#march-2-2020) for more information.
 - Validate against most specific namespace. @t-b, @rly (#1094)
-- Replace 'ic_electrode' with 'icephys_electrode' in NWBFile. @oruebel (#1200)
+- Replace 'ic_electrode' with 'icephys_electrode' in `NWBFile`. @oruebel (#1200)
 - Integrate minor enhancements and bug fixes introduced in HDMF 1.6.0 and 1.6.1, including improved handling of namespaces that lack a version key,
 
 ### Internal improvements:
@@ -42,7 +47,7 @@
 - Fix unit testing output. @rly (#1158)
 - Fix copying files with Subject. @rly (#1171)
 - Add "unit" attribute back as an optional attribute in icephys classes. @rly (#1188)
-- Fix reported development status in setup.py. @rly (#1201)
+- Fix reported development status in `setup.py`. @rly (#1201)
 
 ## PyNWB 1.2.1 (Jan. 22, 2020)
 

tests/integration/hdf5/test_ophys.py

@@ -33,7 +33,11 @@ def setUpContainer(self):
             imaging_rate=300.,
             indicator='GFP',
             location='somewhere in the brain',
-            reference_frame='unknown'
+            reference_frame='unknown',
+            origin_coords=[10, 20],
+            origin_coords_unit='millimeters',
+            grid_spacing=[0.001, 0.001],
+            grid_spacing_unit='millimeters',
         )
 
     def addContainer(self, nwbfile):