[Testing] Add tests for reading tutorial NWB files with pynwb and vice versa #583
Closed
3 tasks done
Comments
ehennestad
added a commit
that referenced
this issue
Aug 29, 2024
3 tasks
bendichter
added a commit
that referenced
this issue
Sep 10, 2024
* Remove tutorialTest (function-based) * Create TutorialTest (class-based unit test) * Add test classes (issue #583 ) * Update description for PynwbTutorialTest * Create getTutorialNwbFilePath.m Add function to create a filepath for saving tutorial nwb files in a fixed folder * Fix: Add starting_time when creating TimeSeries objects (#584) Also, use misc.getTutorialNwbFilePath to create a filepath for saving tutorial nwb file * Update several tutorials: Specify timezone or NWBFile's session_start_time property * Update PynwbTutorialTest.m Add "extensions" tutorial to skipped tutorials as it has an unresolved issue * Fix dynamic_tables tutorial Specify timezone for session start time when creating nwb object Fix maxSize of DataPipe in random_exp_index (VectorIndex object) * Added context and details to the dimension mapping tutorials * Fix dimensionMapWithDataPipes tutorial, ignore outfile in test * Add matplotlib as dependency for PynwbTutorialTest * Add dandi as dependency for PynwbTutorialTest * Add pyenv as dependency for PynwbTutorialTest * Add pynwb dependency for testing MATNWB tutorials * Try getting pynwb on MATLAB's pyenv path * Add fallback option for pynwb reading in MATNWB TutorialTest --------- Co-authored-by: Ben Dichter <[email protected]>
bendichter
added a commit
that referenced
this issue
Sep 12, 2024
* Improve coverage for nwbRead/nwbExport * Remove tutorialTest (function-based) * Create TutorialTest (class-based unit test) * Add test classes (issue #583 ) * Update description for PynwbTutorialTest * Add specific tests for io.timestamp2datetime * Update unit tests * Create getTutorialNwbFilePath.m Add function to create a filepath for saving tutorial nwb files in a fixed folder * Fix: Add starting_time when creating TimeSeries objects (#584) Also, use misc.getTutorialNwbFilePath to create a filepath for saving tutorial nwb file * Update several tutorials: Specify timezone or NWBFile's session_start_time property * Fix bug in io.timestamp2datetime (Issue #585) Some dates are assigned wrongly when Day, Month and Year are set individually, as the datetime object internally/silently adjusts month if day is not valid * Update timestamp2datetime.m Fix: Should not preallocate datetimeArray as it is not known beforehand whether the timestamp has a timezone or not (datetime.empty contrains to datetime w/o timezone) * Update GenerationTest.m Ensure test can be run from any current working directory, not just the matnwb repo folder * Update getMatnwbDir.m Simplyfy function by using mfilename instead of dbstack * Delete file which was introduced with issue #585 * Change nwbtest: Add selector options as input; Add cleanup routine * Add test for constructing Anon with name, value input * Add specific testing of types.untyped.Set When writing test, also discovered a but in types.untyped.Set which is fixed * Remove function call used for debugging --------- Co-authored-by: Ben Dichter <[email protected]>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Build tests to read all files produced by MatNWB tutorials in PyNWB
Build tests to read all files produced by PyNWB tutorials in MatNWB
Resolve potential bugs with some tutorials
The text was updated successfully, but these errors were encountered: