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Make parameter prt_params%woody integer #864

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Jun 3, 2022
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Make parameter prt_params%woody integer #864

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e1b3bf8
Make parameter woody integer.
mpaiao May 3, 2022
26dc861
Merge branch 'master' into mpaiao-pr-woody-int
mpaiao May 4, 2022
5ce4024
Merge branch 'master' into mpaiao-pr-woody-int
glemieux Jun 1, 2022
ec04576
Merge branch 'master' into mpaiao-pr-woody-int
glemieux Jun 2, 2022
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4 changes: 2 additions & 2 deletions biogeochem/EDCanopyStructureMod.F90
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Expand Up @@ -1235,7 +1235,7 @@ subroutine canopy_spread( currentSite )
do while (associated(currentCohort))
call carea_allom(currentCohort%dbh,currentCohort%n, &
currentSite%spread,currentCohort%pft,currentCohort%c_area)
if( ( int(prt_params%woody(currentCohort%pft)) .eq. itrue ) .and. &
if( ( prt_params%woody(currentCohort%pft) .eq. itrue ) .and. &
(currentCohort%canopy_layer .eq. 1 ) ) then
sitelevel_canopyarea = sitelevel_canopyarea + currentCohort%c_area
endif
Expand Down Expand Up @@ -1346,7 +1346,7 @@ subroutine canopy_summarization( nsites, sites, bc_in )

if(currentCohort%canopy_layer==1)then
currentPatch%total_canopy_area = currentPatch%total_canopy_area + currentCohort%c_area
if( int(prt_params%woody(ft))==itrue)then
if( prt_params%woody(ft) == itrue)then
currentPatch%total_tree_area = currentPatch%total_tree_area + currentCohort%c_area
endif
endif
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2 changes: 1 addition & 1 deletion biogeochem/EDCohortDynamicsMod.F90
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Expand Up @@ -2108,7 +2108,7 @@ subroutine EvaluateAndCorrectDBH(currentCohort,delta_dbh,delta_hite)
delta_dbh = 0._r8
delta_hite = 0._r8

if( int(prt_params%woody(currentCohort%pft)) == itrue) then
if( prt_params%woody(currentCohort%pft) == itrue) then

struct_c = currentCohort%prt%GetState(struct_organ, all_carbon_elements)

Expand Down
4 changes: 2 additions & 2 deletions biogeochem/EDLoggingMortalityMod.F90
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Expand Up @@ -259,7 +259,7 @@ subroutine LoggingMortality_frac( pft_i, dbh, canopy_layer, lmort_direct, &

! transfer of area to secondary land is based on overall area affected, not just logged crown area
! l_degrad accounts for the affected area between logged crowns
if(int(prt_params%woody(pft_i)) == 1)then ! only set logging rates for trees
if(prt_params%woody(pft_i) == itrue)then ! only set logging rates for trees

! direct logging rates, based on dbh min and max criteria
if (dbh >= logging_dbhmin .and. .not. &
Expand Down Expand Up @@ -543,7 +543,7 @@ subroutine logging_litter_fluxes(currentSite, currentPatch, newPatch, patch_site
! plants that were impacted. Thus, no direct dead can occur
! here, and indirect are impacts.

if(int(prt_params%woody(pft)) == itrue) then
if(prt_params%woody(pft) == itrue) then
direct_dead = 0.0_r8
indirect_dead = logging_coll_under_frac * &
(1._r8-currentPatch%fract_ldist_not_harvested) * currentCohort%n * &
Expand Down
8 changes: 4 additions & 4 deletions biogeochem/EDPatchDynamicsMod.F90
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Expand Up @@ -778,7 +778,7 @@ subroutine spawn_patches( currentSite, bc_in)

else
! small trees
if( int(prt_params%woody(currentCohort%pft)) == itrue)then
if( prt_params%woody(currentCohort%pft) == itrue)then


! Survivorship of undestory woody plants. Two step process.
Expand Down Expand Up @@ -918,7 +918,7 @@ subroutine spawn_patches( currentSite, bc_in)
! burned off. Here, we remove that mass, and
! tally it in the flux we sent to the atmosphere

if(int(prt_params%woody(currentCohort%pft)) == itrue)then
if(prt_params%woody(currentCohort%pft) == itrue)then
leaf_burn_frac = currentCohort%fraction_crown_burned
else

Expand Down Expand Up @@ -996,7 +996,7 @@ subroutine spawn_patches( currentSite, bc_in)
! WHat to do with cohorts in the understory of a logging generated
! disturbance patch?

if(int(prt_params%woody(currentCohort%pft)) == itrue)then
if(prt_params%woody(currentCohort%pft) == itrue)then


! Survivorship of undestory woody plants. Two step process.
Expand Down Expand Up @@ -1906,7 +1906,7 @@ subroutine mortality_litter_fluxes(currentSite, currentPatch, &
num_dead = currentCohort%n * min(1.0_r8,currentCohort%dmort * &
hlm_freq_day * fates_mortality_disturbance_fraction)

elseif(int(prt_params%woody(pft)) == itrue) then
elseif(prt_params%woody(pft) == itrue) then

! Understorey trees. The total dead is based on their survivorship
! function, and the total area of disturbance.
Expand Down
4 changes: 2 additions & 2 deletions biogeochem/FatesAllometryMod.F90
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Expand Up @@ -2373,7 +2373,7 @@ subroutine ForceDBH( ipft, canopy_trim, d, h, bdead, bl )
integer, parameter :: max_counter = 200

! Do reduce "if" calls, we break this call into two parts
if ( int(prt_params%woody(ipft)) == itrue ) then
if ( prt_params%woody(ipft) == itrue ) then

if(.not.present(bdead)) then
write(fates_log(),*) 'woody plants must use structure for dbh reset'
Expand Down Expand Up @@ -2460,7 +2460,7 @@ subroutine ForceDBH( ipft, canopy_trim, d, h, bdead, bl )

if(counter>20)then
write(fates_log(),*) 'dbh counter: ',counter,' is woody: ',&
int(prt_params%woody(ipft))==itrue
(prt_params%woody(ipft) == itrue)

if(int(prt_params%woody(ipft))==itrue)then
warn_msg = 'dbh counter: '//trim(I2S(counter))//' is woody'
Expand Down
14 changes: 7 additions & 7 deletions fire/SFMainMod.F90
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Expand Up @@ -192,7 +192,7 @@ subroutine charecteristics_of_fuel ( currentSite )
currentPatch%livegrass = 0.0_r8
currentCohort => currentPatch%tallest
do while(associated(currentCohort))
if( int(prt_params%woody(currentCohort%pft)) == ifalse)then
if( prt_params%woody(currentCohort%pft) == ifalse)then

currentPatch%livegrass = currentPatch%livegrass + &
currentCohort%prt%GetState(leaf_organ, all_carbon_elements) * &
Expand Down Expand Up @@ -376,7 +376,7 @@ subroutine wind_effect ( currentSite, bc_in)

do while(associated(currentCohort))
if (debug) write(fates_log(),*) 'SF currentCohort%c_area ',currentCohort%c_area
if( int(prt_params%woody(currentCohort%pft)) == itrue)then
if( prt_params%woody(currentCohort%pft) == itrue)then
currentPatch%total_tree_area = currentPatch%total_tree_area + currentCohort%c_area
else
total_grass_area = total_grass_area + currentCohort%c_area
Expand Down Expand Up @@ -866,7 +866,7 @@ subroutine crown_scorching ( currentSite )
if (currentPatch%fire == 1) then
currentCohort => currentPatch%tallest;
do while(associated(currentCohort))
if ( int(prt_params%woody(currentCohort%pft)) == itrue) then !trees only
if ( prt_params%woody(currentCohort%pft) == itrue) then !trees only

leaf_c = currentCohort%prt%GetState(leaf_organ, all_carbon_elements)
sapw_c = currentCohort%prt%GetState(sapw_organ, all_carbon_elements)
Expand All @@ -880,7 +880,7 @@ subroutine crown_scorching ( currentSite )
enddo !end cohort loop

do i_pft=1,numpft
if (tree_ag_biomass > 0.0_r8 .and. int(prt_params%woody(i_pft)) == itrue) then
if (tree_ag_biomass > 0.0_r8 .and. prt_params%woody(i_pft) == itrue) then

!Equation 16 in Thonicke et al. 2010 !Van Wagner 1973 EQ8 !2/3 Byram (1959)
currentPatch%Scorch_ht(i_pft) = EDPftvarcon_inst%fire_alpha_SH(i_pft) * (currentPatch%FI**0.667_r8)
Expand Down Expand Up @@ -922,7 +922,7 @@ subroutine crown_damage ( currentSite )

do while(associated(currentCohort))
currentCohort%fraction_crown_burned = 0.0_r8
if ( int(prt_params%woody(currentCohort%pft)) == itrue) then !trees only
if ( prt_params%woody(currentCohort%pft) == itrue) then !trees only
! Flames lower than bottom of canopy.
! c%hite is height of cohort

Expand Down Expand Up @@ -986,7 +986,7 @@ subroutine cambial_damage_kill ( currentSite )
if (currentPatch%fire == 1) then
currentCohort => currentPatch%tallest;
do while(associated(currentCohort))
if ( int(prt_params%woody(currentCohort%pft)) == itrue) then !trees only
if ( prt_params%woody(currentCohort%pft) == itrue) then !trees only
! Equation 21 in Thonicke et al 2010
bt = EDPftvarcon_inst%bark_scaler(currentCohort%pft)*currentCohort%dbh ! bark thickness.
! Equation 20 in Thonicke et al. 2010.
Expand Down Expand Up @@ -1038,7 +1038,7 @@ subroutine post_fire_mortality ( currentSite )
do while(associated(currentCohort))
currentCohort%fire_mort = 0.0_r8
currentCohort%crownfire_mort = 0.0_r8
if ( int(prt_params%woody(currentCohort%pft)) == itrue) then
if ( prt_params%woody(currentCohort%pft) == itrue) then
! Equation 22 in Thonicke et al. 2010.
currentCohort%crownfire_mort = EDPftvarcon_inst%crown_kill(currentCohort%pft)*currentCohort%fraction_crown_burned**3.0_r8
! Equation 18 in Thonicke et al. 2010.
Expand Down
2 changes: 1 addition & 1 deletion main/FatesHistoryInterfaceMod.F90
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Expand Up @@ -2505,7 +2505,7 @@ subroutine update_history_dyn(this,nc,nsites,sites)
store_m_net_alloc*n_perm2 / days_per_year / sec_per_day

! Woody State Variables (basal area growth increment)
if ( int(prt_params%woody(ft)) == itrue) then
if ( prt_params%woody(ft) == itrue) then

! basal area [m2/m2]
hio_ba_si_scpf(io_si,scpf) = hio_ba_si_scpf(io_si,scpf) + &
Expand Down
2 changes: 1 addition & 1 deletion parteh/PRTParametersMod.F90
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Expand Up @@ -100,7 +100,7 @@ module PRTParametersMod

real(r8), allocatable :: c2b(:) ! Carbon to biomass multiplier [kg/kgC]
real(r8), allocatable :: wood_density(:) ! wood density g cm^-3 ...
real(r8), allocatable :: woody(:) ! Does the plant have wood? (1=yes, 0=no)
integer , allocatable :: woody(:) ! Does the plant have wood? (1=yes, 0=no)
real(r8), allocatable :: crown(:) ! fraction of the height of the plant
! that is occupied by crown
real(r8), allocatable :: slamax(:) ! Maximum specific leaf area of plant (at bottom) [m2/gC]
Expand Down
16 changes: 10 additions & 6 deletions parteh/PRTParamsFATESMod.F90
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Expand Up @@ -441,8 +441,12 @@ subroutine PRTReceivePFT(fates_params)

name = 'fates_woody'
call fates_params%RetreiveParameterAllocate(name=name, &
data=prt_params%woody)

data=tmpreal)
allocate(prt_params%woody(size(tmpreal,dim=1)))
call ArrayNint(tmpreal,prt_params%woody)
deallocate(tmpreal)


name = 'fates_wood_density'
call fates_params%RetreiveParameterAllocate(name=name, &
data=prt_params%wood_density)
Expand Down Expand Up @@ -1078,13 +1082,13 @@ subroutine PRTCheckParams(is_master)
! Check if woody plants have a structural biomass (agb) intercept
! ----------------------------------------------------------------------------------
if ( ( prt_params%allom_agb1(ipft) <= tiny(prt_params%allom_agb1(ipft)) ) .and. &
( int(prt_params%woody(ipft)) .eq. 1 ) ) then
( prt_params%woody(ipft) .eq. 1 ) ) then

write(fates_log(),*) 'Woody plants are expected to have a non-zero intercept'
write(fates_log(),*) ' in the diameter to AGB allometry equations'
write(fates_log(),*) ' PFT#: ',ipft
write(fates_log(),*) ' allom_agb1: ',prt_params%allom_agb1(ipft)
write(fates_log(),*) ' woody: ',int(prt_params%woody(ipft))
write(fates_log(),*) ' woody: ',prt_params%woody(ipft)
write(fates_log(),*) ' Aborting'
call endrun(msg=errMsg(sourcefile, __LINE__))

Expand All @@ -1093,7 +1097,7 @@ subroutine PRTCheckParams(is_master)
! Check if non-woody plants have structural biomass (agb) intercept
! ----------------------------------------------------------------------------------
! if ( ( prt_params%allom_agb1(ipft) > tiny(prt_params%allom_agb1(ipft)) ) .and. &
! ( int(prt_params%woody(ipft)) .ne. 1 ) ) then
! ( iprt_params%woody(ipft) .ne. 1 ) ) then
!
! write(fates_log(),*) 'Non-woody plants are expected to have a zero intercept'
! write(fates_log(),*) ' in the diameter to AGB allometry equations'
Expand All @@ -1102,7 +1106,7 @@ subroutine PRTCheckParams(is_master)
! write(fates_log(),*) ' woody tissues (sap and structural dead wood).'
! write(fates_log(),*) ' PFT#: ',ipft
! write(fates_log(),*) ' allom_agb1: ',prt_params%allom_agb1(ipft)
! write(fates_log(),*) ' woody: ',int(prt_params%woody(ipft))
! write(fates_log(),*) ' woody: ',prt_params%woody(ipft)
! write(fates_log(),*) ' Aborting'
! call endrun(msg=errMsg(sourcefile, __LINE__))
!
Expand Down