Merge development branch #42
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* csv separator autodetection * more integration tests via cli * Adding proper help text to arguments * adding Recon3D models and sequence data via Git LFS * additional information on readme * json model support for the CLI * add option to only run fast tests * flipping CLI argument order * simplification, fixing tests
adding .mat file support to CLI
* fix pinning of package versions that wasn't working * upgrade pylint as the old version crashed
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