Code

Nf reads taxonomy#8

Code

Merged

mflynn-lanl merged 22 commits intomainLANL-Bioinformatics/EDGEv3:mainfrom nf_readsTaxonomyLANL-Bioinformatics/EDGEv3:nf_readsTaxonomyCopy head branch name to clipboardSep 16, 2024

+1,335,076

Commits

Commits on Jul 16, 2024

• initial NF version

  aw-watson

  committed
  1d8d2a6

• added test files in central location

  aw-watson

  committed
  fa8188b

Commits on Jul 17, 2024

• minor revisions

  aw-watson

  committed
  7f29a88

• variable definition

  aw-watson

  committed
  2dc63d7

• third-party requirement rework

  aw-watson

  committed
  4fdb0b0

Commits on Jul 25, 2024

• taxonomy classification running against databases

  

  Andre Watson

  committed
  938e03a

Commits on Jul 26, 2024

• Initial Dockerfile

  aw-watson

  committed
  af4bb0b

Commits on Jul 29, 2024

• v1.0 Docker image

  aw-watson

  committed
  8fd6f09

• shifted execution of Krona prep scripts to workflow

  aw-watson

  committed
  e12522e

Commits on Jul 30, 2024

• attempt to resolve singularity write permissions

  aw-watson

  committed
  0634ccc

Commits on Aug 12, 2024

• properly creates container converted to Singularity

  aw-watson

  committed
  4ecb0ab

Commits on Aug 14, 2024

• Runs all taxonomies in container

  aw-watson

  committed
  463fcf3

• fixed scripts to prevent container issues

  aw-watson

  committed
  c2af310

• Merge branch 'nf_readsTaxonomy' of https://github.com/LANL-Bioinformatics/EDGE_workflows into nf_readsTaxonomy

  aw-watson

  committed
  cc3bf97

Commits on Aug 15, 2024

• better matchingfor EDGE output

  aw-watson

  committed
  8ae4358

Commits on Aug 22, 2024

• Fixed issue in perl scripts causing errors when generating reports

  aw-watson

  committed
  b7b7d25

Commits on Aug 26, 2024

• Creating PDFs from SVGs

  aw-watson

  committed
  9f5ade8

• producing PDFs from SVG trees

  aw-watson

  committed
  a47ae79

• adding the actual svg2pdf script to bin

  aw-watson

  committed
  0465aed

• Merge branch 'nf_readsTaxonomy' of https://github.com/LANL-Bioinformatics/EDGE_workflows into nf_readsTaxonomy

  aw-watson

  committed
  85fc74d

Commits on Sep 3, 2024

• fixed heatmap generation

  aw-watson

  committed
  c97cf06

• cleanup

  aw-watson

  committed
  7eb69e7