EDGE_workflows

This is repo with reconstructed EDGE bioinformatics modularized workflows by using Nextflow. Here is the list for modules and could be expanded.

1. sra2fastq
2. runFaQCs
3. hostRemoval
4. runAssembly
5. runReadsToContig
6. readsTaxonomyAssignment
7. contigsTaxonomyAssignment
8. runAnnotation
9. phageFinder
10. runAntiSmash
11. runBinning
12. runCheckM
13. runSpecialtyGenesProfiling
14. ...