Code

Nf run assembly#7

Code

Merged

mflynn-lanl merged 9 commits intomainLANL-Bioinformatics/EDGEv3:mainfrom nf_runAssemblyLANL-Bioinformatics/EDGEv3:nf_runAssemblyCopy head branch name to clipboardSep 16, 2024

+1,095

Commits

Commits on Jul 1, 2024

• Early version. Not yet functional

  aw-watson

  committed
  be57915

Commits on Jul 2, 2024

• IDBA runs from NF script

  aw-watson

  committed
  b476074

Commits on Jul 3, 2024

• 4 of 5 assemblers running

  aw-watson

  committed
  f91da30

Commits on Jul 5, 2024

• all assemblers running

  aw-watson

  committed
  ef415fe

Commits on Jul 8, 2024

• Assemblers running. Graphs produced.

  aw-watson

  committed
  b939da8

Commits on Jul 9, 2024

• workflow now creates contigs for assembly

  aw-watson

  committed
  3333575

Commits on Jul 12, 2024

• Docker image for environment

  aw-watson

  committed
  1a51cb3

Commits on Aug 7, 2024

• Better matches EDGE output

  aw-watson

  committed
  3645606

Commits on Aug 8, 2024

• Attempts to rescue incomplete assemblies, similar to EDGE

  aw-watson

  committed
  b2c3d5f