Code

Nf composition#15

Code

Merged

aw-watson merged 19 commits intoedge_v3LANL-Bioinformatics/EDGEv3:edge_v3from nf_compositionLANL-Bioinformatics/EDGEv3:nf_compositionCopy head branch name to clipboardDec 23, 2024

+892-512

Commits

Commits on Nov 6, 2024

• runAssembly in pipeline

  aw-watson

  committed
  79219ec

Commits on Nov 21, 2024

• host removal testing + cleanup

  aw-watson

  committed
  f4abc8e

Commits on Nov 26, 2024

• tests for runAssembly

  aw-watson

  committed
  6472018

Commits on Dec 9, 2024

• reads to contig restructured as subworkflow. adding nf-test CI

  aw-watson

  committed
  0fcb34a

• fixing JDK version for CI

  aw-watson

  committed
  184f453

• testing Apptainer for CI

  aw-watson

  committed
  b11e4dc

• cleanup

  aw-watson

  committed
  eddba05

Commits on Dec 10, 2024

• updated snapshots for JDK 17

  aw-watson

  committed
  1cd85d7

• adding debugging output

  aw-watson

  committed
  d544168

• more testing output for GH actions

  aw-watson

  committed
  b110dcb

• added Git LFS to testing yml

  aw-watson

  committed
  49c618e

• adding sharding to tests - checking to see if this resolves space issues with the runner

  aw-watson

  committed
  167adfc

• removing files from LFS

  aw-watson

  committed
  76c285d

Commits on Dec 17, 2024

• basic testing for runReadsToContig

  aw-watson

  committed
  46f4aa2

• adding nf-test file

  aw-watson

  committed
  d587915

• attempting optimized testing requirements

  aw-watson

  committed
  497acdd

• reverting testing strategy

  aw-watson

  committed
  c69b0e0

Commits on Dec 23, 2024

• host removal testing accounts for inconsistent file naming

  aw-watson

  committed
  44f80bf

• Merge branch 'edge_v3' into nf_composition

  aw-watson

  authored
  d7f92b3