Code

Nf contigs taxonomy#12

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mflynn-lanl merged 12 commits intomainLANL-Bioinformatics/EDGEv3:mainfrom nf_contigsTaxonomyLANL-Bioinformatics/EDGEv3:nf_contigsTaxonomyCopy head branch name to clipboardSep 25, 2024

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Commits

Commits on Aug 19, 2024

• initial workflow and container

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  ed49412

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• added some local test files

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Commits on Aug 20, 2024

• Fixed image to have working version of miccr

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• initial classification step runs

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• Merge branch 'nf_contigsTaxonomy' of https://github.com/LANL-Bioinformatics/EDGE_workflows into nf_contigsTaxonomy

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• adding detection of unclassified contigs, lineage of results to workflow

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Commits on Aug 21, 2024

• perl scripts cleanup

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• separating out lineage addition

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• Full workflow running

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• updated Docker image

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Commits on Aug 23, 2024

• matching EDGE output

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Commits on Aug 26, 2024

• documentation and indication of user-specified paths for binds

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