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Update installation.rst
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ctokheim authored Aug 3, 2024
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4 changes: 2 additions & 2 deletions rtd/installation.rst
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Expand Up @@ -54,7 +54,7 @@ Features for mutations CHASMplus are obtained can also be prepared by directly

.. code-block:: bash
$ wget http://karchinlab.org/datasets/SNVBox_chasmplus.sql.gz
$ wget https://www.dropbox.com/scl/fi/wo8qva7s77p4bptvdnjyw/SNVBox_chasmplus.sql.gz?rlkey=mxxqoruksbg2eaol1fqxmhrfn&st=ksnshvcl&dl=1 -o SNVBox_chasmplus.sql.gz
$ gunzip SNVBox_chasmplus.sql.gz
$ mysql [options] < SNVBox_chasm2.sql
Expand All @@ -67,7 +67,7 @@ The next step is to download the code that fetches features from the SNVBox data

.. code-block:: bash
$ wget http://karchinlab.org/datasets/SNVBox.tar.gz
$ wget https://www.dropbox.com/scl/fi/tkaysovawrl6euhc033id/SNVBox.tar.gz?rlkey=oz30lj02xbsjcmkugb7nrfoh4&st=81tk4q6t&dl=1 -o SNVBox.tar.gz
The next step is to set the configuration file (snv_box.conf) to point towards the established database in the previous section. Specifically, change the db.user, db.password, and db.host to point towards your own mysql user name, mysql password, and mysql host.

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