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Update download.rst
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ctokheim authored Aug 3, 2024
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Expand Up @@ -13,11 +13,11 @@ Necessary additional code
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* `20/20+ code <https://github.com/KarchinLab/2020plus/releases>`_ produces driver gene scores. Please follow installation instructions from the `20/20+ website <http://2020plus.readthedocs.io/>`_.
* `SNVBox code <http://karchinlab.org/data/CHASMplus/SNVBox.tar.gz>`_ fetches the features used by CHASMplus from a MySQL database
* `SNVBox code <https://www.dropbox.com/scl/fi/tkaysovawrl6euhc033id/SNVBox.tar.gz?rlkey=oz30lj02xbsjcmkugb7nrfoh4&st=l52p3swv&dl=1>`_ fetches the features used by CHASMplus from a MySQL database

Necessary data files
--------------------

* `SNVBox MySQL database <http://karchinlab.org/data/CHASMplus/SNVBox_chasmplus.sql.gz>`_
* `Pre-computed scores <http://karchinlab.org/data/2020+/scores.tar.gz>`_ data set
* `Reference SNVBox transcripts <http://karchinlab.org/data/2020+/snvboxGenes.bed>`_ in BED format
* `SNVBox MySQL database <https://www.dropbox.com/scl/fi/wo8qva7s77p4bptvdnjyw/SNVBox_chasmplus.sql.gz?rlkey=mxxqoruksbg2eaol1fqxmhrfn&st=3513k5w5&dl=1>`_
* `Pre-computed scores <https://www.dropbox.com/scl/fi/o6eaih9d3rr9ztms2pa33/scores.tar.gz?rlkey=ekih9qstzfncn8811935a7ghb&st=7xclu3na&dl=1>`_ data set
* `Reference SNVBox transcripts <https://www.dropbox.com/scl/fi/jnucugcu4qslb8vw0s9ry/snvboxGenes.bed?rlkey=yc3gqu4msx0wgqb6wo149rpok&st=0n4zkwdj&dl=1>`_ in BED format

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