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Merge pull request #111 from JuliaTrustworthyAI/110-compat-for-mljbas…
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…e-still-messing-things-up

removed TaijaPLotting
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@pat-alt
pat-alt authored Jul 23, 2024
2 parents 5a0d901 + e185543 commit d27ee27
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2 changes: 1 addition & 1 deletion Project.toml
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Expand Up @@ -30,7 +30,7 @@ ComputationalResources = "0.3.2"
Distributions = "0.25.109"
Flux = "0.12, 0.13, 0.14"
LinearAlgebra = "1.7, 1.10"
MLJBase = ">=0.4, 1"
MLJBase = "1"
MLJFlux = "0.5"
MLJModelInterface = "1.8.0"
MLUtils = "0.4"
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138 changes: 21 additions & 117 deletions docs/Manifest.toml
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Expand Up @@ -2,7 +2,7 @@

julia_version = "1.10.4"
manifest_format = "2.0"
project_hash = "3a38b320d6e28531e4489912be325157cb3ab4b9"
project_hash = "07bab9fa5d046478b21247a44464171c6b19ad4c"

[[deps.ANSIColoredPrinters]]
git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c"
Expand Down Expand Up @@ -71,18 +71,6 @@ version = "2.3.0"
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
version = "1.1.1"

[[deps.Arpack]]
deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"]
git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436"
uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97"
version = "0.5.4"

[[deps.Arpack_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"]
git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e"
uuid = "68821587-b530-5797-8361-c406ea357684"
version = "3.5.1+1"

[[deps.Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"

Expand Down Expand Up @@ -328,12 +316,6 @@ git-tree-sha1 = "ea32b83ca4fefa1768dc84e504cc0a94fb1ab8d1"
uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
version = "2.4.2"

[[deps.ConformalPrediction]]
deps = ["CategoricalArrays", "MLJBase", "MLJModelInterface", "NaturalSort", "Plots", "Statistics"]
git-tree-sha1 = "520277c269dd9169fb5ae4b6eff45eeae46d4900"
uuid = "98bfc277-1877-43dc-819b-a3e38c30242f"
version = "0.1.5"

[[deps.ConstructionBase]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "d8a9c0b6ac2d9081bf76324b39c78ca3ce4f0c98"
Expand All @@ -359,22 +341,6 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8"
uuid = "d38c429a-6771-53c6-b99e-75d170b6e991"
version = "0.6.3"

[[deps.CounterfactualExplanations]]
deps = ["CategoricalArrays", "ChainRulesCore", "DataFrames", "Distributions", "Flux", "LazyArtifacts", "LinearAlgebra", "Logging", "MLJBase", "MLJDecisionTreeInterface", "MLUtils", "MultivariateStats", "PackageExtensionCompat", "ProgressMeter", "Random", "Serialization", "Statistics", "StatsBase", "Tables", "TaijaBase", "UUIDs"]
git-tree-sha1 = "8a68385b6852e9357889aea661536059bc8b6158"
uuid = "2f13d31b-18db-44c1-bc43-ebaf2cff0be0"
version = "1.1.6"

[deps.CounterfactualExplanations.extensions]
DecisionTreeExt = "DecisionTree"
LaplaceReduxExt = "LaplaceRedux"
NeuroTreeExt = "NeuroTreeModels"

[deps.CounterfactualExplanations.weakdeps]
DecisionTree = "7806a523-6efd-50cb-b5f6-3fa6f1930dbb"
LaplaceRedux = "c52c1a26-f7c5-402b-80be-ba1e638ad478"
NeuroTreeModels = "1db4e0a5-a364-4b0c-897c-2bd5a4a3a1f2"

[[deps.Crayons]]
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uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
Expand Down Expand Up @@ -406,12 +372,6 @@ version = "1.0.0"
deps = ["Printf"]
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"

[[deps.DecisionTree]]
deps = ["AbstractTrees", "DelimitedFiles", "LinearAlgebra", "Random", "ScikitLearnBase", "Statistics"]
git-tree-sha1 = "526ca14aaaf2d5a0e242f3a8a7966eb9065d7d78"
uuid = "7806a523-6efd-50cb-b5f6-3fa6f1930dbb"
version = "0.12.4"

[[deps.DefineSingletons]]
git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c"
uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52"
Expand All @@ -435,17 +395,6 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272"
uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
version = "1.15.1"

[[deps.Distances]]
deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0"
uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
version = "0.10.11"
weakdeps = ["ChainRulesCore", "SparseArrays"]

[deps.Distances.extensions]
DistancesChainRulesCoreExt = "ChainRulesCore"
DistancesSparseArraysExt = "SparseArrays"

[[deps.Distributed]]
deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
Expand Down Expand Up @@ -911,6 +860,12 @@ version = "1.2.2"
deps = ["Artifacts", "Pkg"]
uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"

[[deps.LearnAPI]]
deps = ["InteractiveUtils", "Statistics"]
git-tree-sha1 = "ec695822c1faaaa64cee32d0b21505e1977b4809"
uuid = "92ad9a40-7767-427a-9ee6-6e577f1266cb"
version = "0.1.0"

[[deps.LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"]
uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
Expand Down Expand Up @@ -1015,27 +970,17 @@ git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075"
uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
version = "1.0.3"

[[deps.LossFunctions]]
deps = ["Markdown", "Requires", "Statistics"]
git-tree-sha1 = "df9da07efb9b05ca7ef701acec891ee8f73c99e2"
uuid = "30fc2ffe-d236-52d8-8643-a9d8f7c094a7"
version = "0.11.1"
weakdeps = ["CategoricalArrays"]

[deps.LossFunctions.extensions]
LossFunctionsCategoricalArraysExt = "CategoricalArrays"

[[deps.MLJBase]]
deps = ["CategoricalArrays", "CategoricalDistributions", "ComputationalResources", "Dates", "DelimitedFiles", "Distributed", "Distributions", "InteractiveUtils", "InvertedIndices", "LinearAlgebra", "LossFunctions", "MLJModelInterface", "Missings", "OrderedCollections", "Parameters", "PrettyTables", "ProgressMeter", "Random", "ScientificTypes", "Serialization", "StatisticalTraits", "Statistics", "StatsBase", "Tables"]
git-tree-sha1 = "0b7307d1a7214ec3c0ba305571e713f9492ea984"
deps = ["CategoricalArrays", "CategoricalDistributions", "ComputationalResources", "Dates", "DelimitedFiles", "Distributed", "Distributions", "InteractiveUtils", "InvertedIndices", "LearnAPI", "LinearAlgebra", "MLJModelInterface", "Missings", "OrderedCollections", "Parameters", "PrettyTables", "ProgressMeter", "Random", "RecipesBase", "Reexport", "ScientificTypes", "Serialization", "StatisticalMeasuresBase", "StatisticalTraits", "Statistics", "StatsBase", "Tables"]
git-tree-sha1 = "6f45e12073bc2f2e73ed0473391db38c31e879c9"
uuid = "a7f614a8-145f-11e9-1d2a-a57a1082229d"
version = "0.21.14"
version = "1.7.0"

[[deps.MLJDecisionTreeInterface]]
deps = ["CategoricalArrays", "DecisionTree", "MLJModelInterface", "Random", "Tables"]
git-tree-sha1 = "90ef4d3b6cacec631c57cc034e1e61b4aa0ce511"
uuid = "c6f25543-311c-4c74-83dc-3ea6d1015661"
version = "0.4.2"
[deps.MLJBase.extensions]
DefaultMeasuresExt = "StatisticalMeasures"

[deps.MLJBase.weakdeps]
StatisticalMeasures = "a19d573c-0a75-4610-95b3-7071388c7541"

[[deps.MLJFlux]]
deps = ["CategoricalArrays", "ColorTypes", "ComputationalResources", "Flux", "MLJModelInterface", "Metalhead", "Optimisers", "ProgressMeter", "Random", "Statistics", "Tables"]
Expand Down Expand Up @@ -1127,12 +1072,6 @@ version = "0.7.8"
uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
version = "2023.1.10"

[[deps.MultivariateStats]]
deps = ["Arpack", "Distributions", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"]
git-tree-sha1 = "816620e3aac93e5b5359e4fdaf23ca4525b00ddf"
uuid = "6f286f6a-111f-5878-ab1e-185364afe411"
version = "0.10.3"

[[deps.NNlib]]
deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"]
git-tree-sha1 = "190dcada8cf9520198058c4544862b1f88c6c577"
Expand Down Expand Up @@ -1177,23 +1116,6 @@ git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e"
uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391"
version = "0.1.5"

[[deps.NaturalSort]]
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uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85"
version = "1.0.0"

[[deps.NearestNeighborModels]]
deps = ["Distances", "FillArrays", "InteractiveUtils", "LinearAlgebra", "MLJModelInterface", "NearestNeighbors", "Statistics", "StatsBase", "Tables"]
git-tree-sha1 = "e411143a8362926e4284a54e745972e939fbab78"
uuid = "636a865e-7cf4-491e-846c-de09b730eb36"
version = "0.2.3"

[[deps.NearestNeighbors]]
deps = ["Distances", "StaticArrays"]
git-tree-sha1 = "91a67b4d73842da90b526011fa85c5c4c9343fe0"
uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce"
version = "0.4.18"

[[deps.NetworkOptions]]
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
version = "1.2.0"
Expand Down Expand Up @@ -1266,12 +1188,6 @@ git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65"
uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
version = "0.11.31"

[[deps.PackageExtensionCompat]]
git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518"
uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930"
version = "1.0.2"
weakdeps = ["Requires", "TOML"]

[[deps.Parameters]]
deps = ["OrderedCollections", "UnPack"]
git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe"
Expand Down Expand Up @@ -1518,12 +1434,6 @@ git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b"
uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161"
version = "3.0.0"

[[deps.ScikitLearnBase]]
deps = ["LinearAlgebra", "Random", "Statistics"]
git-tree-sha1 = "7877e55c1523a4b336b433da39c8e8c08d2f221f"
uuid = "6e75b9c4-186b-50bd-896f-2d2496a4843e"
version = "0.5.0"

[[deps.Scratch]]
deps = ["Dates"]
git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386"
Expand Down Expand Up @@ -1619,6 +1529,12 @@ git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682"
uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
version = "1.4.3"

[[deps.StatisticalMeasuresBase]]
deps = ["CategoricalArrays", "InteractiveUtils", "MLUtils", "MacroTools", "OrderedCollections", "PrecompileTools", "ScientificTypesBase", "Statistics"]
git-tree-sha1 = "17dfb22e2e4ccc9cd59b487dce52883e0151b4d3"
uuid = "c062fc1d-0d66-479b-b6ac-8b44719de4cc"
version = "0.1.1"

[[deps.StatisticalTraits]]
deps = ["ScientificTypesBase"]
git-tree-sha1 = "542d979f6e756f13f862aa00b224f04f9e445f11"
Expand Down Expand Up @@ -1704,18 +1620,6 @@ git-tree-sha1 = "598cd7c1f68d1e205689b1c2fe65a9f85846f297"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.12.0"

[[deps.TaijaBase]]
deps = ["CategoricalArrays", "Distributions", "Flux", "MLUtils", "Optimisers", "StatsBase", "Tables"]
git-tree-sha1 = "1c80c4472c6ab6e8c9fa544a22d907295b388dd0"
uuid = "10284c91-9f28-4c9a-abbf-ee43576dfff6"
version = "1.2.2"

[[deps.TaijaPlotting]]
deps = ["CategoricalArrays", "ConformalPrediction", "CounterfactualExplanations", "DataAPI", "Distributions", "Flux", "LaplaceRedux", "LinearAlgebra", "MLJBase", "MLUtils", "MultivariateStats", "NaturalSort", "NearestNeighborModels", "Plots"]
git-tree-sha1 = "2a4fcdf2abd5533d6d24a97ce5e89327391b2dc1"
uuid = "bd7198b4-c7d6-400c-9bab-9a24614b0240"
version = "1.1.2"

[[deps.Tar]]
deps = ["ArgTools", "SHA"]
uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
Expand Down
1 change: 0 additions & 1 deletion docs/Project.toml
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Expand Up @@ -12,7 +12,6 @@ Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
TaijaPlotting = "bd7198b4-c7d6-400c-9bab-9a24614b0240"
Trapz = "592b5752-818d-11e9-1e9a-2b8ca4a44cd1"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd"

2 comments on commit d27ee27

@pat-alt
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Registration pull request updated: JuliaRegistries/General/111486

Tip: Release Notes

Did you know you can add release notes too? Just add markdown formatted text underneath the comment after the text
"Release notes:" and it will be added to the registry PR, and if TagBot is installed it will also be added to the
release that TagBot creates. i.e.

@JuliaRegistrator register

Release notes:

## Breaking changes

- blah

To add them here just re-invoke and the PR will be updated.

Tagging

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if the Julia TagBot GitHub Action is installed, or can be done manually through the github interface, or via:

git tag -a v1.0.0 -m "<description of version>" d27ee277d1beaeff0f3742cb312d59decbc3728a
git push origin v1.0.0

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