Extraction of Globals.prefs.put and .get

docs/getting-into-the-code/code-howtos.md

@@ -211,7 +211,7 @@ Optional<Path> file = FileHelper.expandFilename(database, fileText, preferences.
 
 ## How to work with Preferences
 
-`model` and `logic` must not know JabRefPreferences. See `ProxyPreferences` for encapsulated preferences and [https://github.com/JabRef/jabref/pull/658](https://github.com/JabRef/jabref/pull/658) for a detailed discussion.
+`model` and `logic` must not know `JabRefPreferences`. See `ProxyPreferences` for encapsulated preferences and [https://github.com/JabRef/jabref/pull/658](https://github.com/JabRef/jabref/pull/658) for a detailed discussion.
 
 See [https://github.com/JabRef/jabref/blob/master/src/main/java/org/jabref/logic/preferences/TimestampPreferences.java](https://github.com/JabRef/jabref/blob/master/src/main/java/org/jabref/logic/preferences/TimestampPreferences.java) \(via [https://github.com/JabRef/jabref/pull/3092](https://github.com/JabRef/jabref/pull/3092)\) for the current way how to deal with preferences.
 
@@ -291,9 +291,12 @@ Or even better, try to mock the preferences and insert them via dependency injec
 @Test
 public void getTypeReturnsBibLatexArticleInBibLatexMode() {
      // Mock preferences
-     JabrefPreferences mockedPrefs = mock(JabrefPreferences.class);
+     PreferencesService mockedPrefs = mock(PreferencesService.class);
+     GeneralPreferences mockedGeneralPrefs = mock(GeneralPReferences.class);
      // Switch to BibLatex mode
-     when(mockedPrefs.getBoolean("BiblatexMode")).thenReturn(true);
+     when(mockedPrefs.getGeneralPrefs()).thenReturn(mockedGeneralPrefs);
+     when(mockedGeneralPrefs.getDefaultBibDatabaseMode())
+        .thenReturn(BibDatabaseMode.BIBLATEX);
 
      // Now test
      EntryTypes biblatexentrytypes = new EntryTypes(mockedPrefs);

src/main/java/org/jabref/cli/ArgumentProcessor.java

@@ -456,8 +456,8 @@ private void exportFile(List<ParserResult> loaded, String[] data) {
     private void importPreferences() {
         try {
             Globals.prefs.importPreferences(cli.getPreferencesImport());
-            Globals.entryTypesManager.addCustomOrModifiedTypes(Globals.prefs.loadBibEntryTypes(BibDatabaseMode.BIBTEX),
-                    Globals.prefs.loadBibEntryTypes(BibDatabaseMode.BIBLATEX));
+            Globals.entryTypesManager.addCustomOrModifiedTypes(Globals.prefs.getBibEntryTypes(BibDatabaseMode.BIBTEX),
+                    Globals.prefs.getBibEntryTypes(BibDatabaseMode.BIBLATEX));
             List<TemplateExporter> customExporters = Globals.prefs.getCustomExportFormats(Globals.journalAbbreviationRepository);
             LayoutFormatterPreferences layoutPreferences =
                     Globals.prefs.getLayoutFormatterPreferences(Globals.journalAbbreviationRepository);

src/main/java/org/jabref/gui/ClipBoardManager.java

@@ -33,6 +33,7 @@
 import org.jabref.model.entry.BibEntry;
 import org.jabref.model.entry.identifier.DOI;
 import org.jabref.model.util.OptionalUtil;
+import org.jabref.preferences.PreferencesService;
 
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
@@ -47,15 +48,18 @@ public class ClipBoardManager {
     private static Clipboard clipboard;
     private static java.awt.datatransfer.Clipboard primary;
     private static ImportFormatReader importFormatReader;
+    private final PreferencesService preferencesService;
 
-    public ClipBoardManager() {
-        this(Clipboard.getSystemClipboard(), Toolkit.getDefaultToolkit().getSystemSelection(), Globals.IMPORT_FORMAT_READER);
+    public ClipBoardManager(PreferencesService preferencesService) {
+        this(Clipboard.getSystemClipboard(), Toolkit.getDefaultToolkit().getSystemSelection(), Globals.IMPORT_FORMAT_READER, preferencesService);
     }
 
-    public ClipBoardManager(Clipboard clipboard, java.awt.datatransfer.Clipboard primary, ImportFormatReader importFormatReader) {
+    public ClipBoardManager(Clipboard clipboard, java.awt.datatransfer.Clipboard primary, ImportFormatReader importFormatReader, PreferencesService preferencesService) {
         ClipBoardManager.clipboard = clipboard;
         ClipBoardManager.primary = primary;
         ClipBoardManager.importFormatReader = importFormatReader;
+
+        this.preferencesService = preferencesService;
     }
 
     /**
@@ -154,7 +158,7 @@ public void setContent(String string) {
 
     public void setContent(List<BibEntry> entries) throws IOException {
         final ClipboardContent content = new ClipboardContent();
-        BibEntryWriter writer = new BibEntryWriter(new FieldWriter(Globals.prefs.getFieldWriterPreferences()), Globals.entryTypesManager);
+        BibEntryWriter writer = new BibEntryWriter(new FieldWriter(preferencesService.getFieldWriterPreferences()), Globals.entryTypesManager);
         String serializedEntries = writer.serializeAll(entries, BibDatabaseMode.BIBTEX);
         content.put(DragAndDropDataFormats.ENTRIES, serializedEntries);
         content.putString(serializedEntries);
@@ -172,7 +176,7 @@ public List<BibEntry> extractData() {
     }
 
     private List<BibEntry> handleBibTeXData(String entries) {
-        BibtexParser parser = new BibtexParser(Globals.prefs.getImportFormatPreferences(), Globals.getFileUpdateMonitor());
+        BibtexParser parser = new BibtexParser(preferencesService.getImportFormatPreferences(), Globals.getFileUpdateMonitor());
         try {
             return parser.parseEntries(new ByteArrayInputStream(entries.getBytes(StandardCharsets.UTF_8)));
         } catch (ParseException ex) {
@@ -206,7 +210,7 @@ private List<BibEntry> tryImportFormats(String data) {
     private List<BibEntry> fetchByDOI(DOI doi) {
         LOGGER.info("Found DOI in clipboard");
         try {
-            Optional<BibEntry> entry = new DoiFetcher(Globals.prefs.getImportFormatPreferences()).performSearchById(doi.getDOI());
+            Optional<BibEntry> entry = new DoiFetcher(preferencesService.getImportFormatPreferences()).performSearchById(doi.getDOI());
             return OptionalUtil.toList(entry);
         } catch (FetcherException ex) {
             LOGGER.error("Error while fetching", ex);

src/main/java/org/jabref/gui/EntryTypeView.java

@@ -34,7 +34,7 @@
 import org.jabref.model.entry.types.IEEETranEntryTypeDefinitions;
 import org.jabref.model.entry.types.StandardEntryType;
 import org.jabref.model.strings.StringUtil;
-import org.jabref.preferences.JabRefPreferences;
+import org.jabref.preferences.PreferencesService;
 
 import com.airhacks.afterburner.views.ViewLoader;
 import com.tobiasdiez.easybind.EasyBind;
@@ -63,16 +63,16 @@ public class EntryTypeView extends BaseDialog<EntryType> {
 
     private final LibraryTab libraryTab;
     private final DialogService dialogService;
-    private final JabRefPreferences prefs;
+    private final PreferencesService preferencesService;
 
     private EntryType type;
     private EntryTypeViewModel viewModel;
     private final ControlsFxVisualizer visualizer = new ControlsFxVisualizer();
 
-    public EntryTypeView(LibraryTab libraryTab, DialogService dialogService, JabRefPreferences preferences) {
+    public EntryTypeView(LibraryTab libraryTab, DialogService dialogService, PreferencesService preferences) {
         this.libraryTab = libraryTab;
         this.dialogService = dialogService;
-        this.prefs = preferences;
+        this.preferencesService = preferences;
 
         this.setTitle(Localization.lang("Select entry type"));
         ViewLoader.view(this)
@@ -121,7 +121,7 @@ private void addEntriesToPane(FlowPane pane, Collection<? extends BibEntryType>
     @FXML
     public void initialize() {
         visualizer.setDecoration(new IconValidationDecorator());
-        viewModel = new EntryTypeViewModel(prefs, libraryTab, dialogService, stateManager);
+        viewModel = new EntryTypeViewModel(preferencesService, libraryTab, dialogService, stateManager);
 
         idBasedFetchers.itemsProperty().bind(viewModel.fetcherItemsProperty());
         idTextField.textProperty().bindBidirectional(viewModel.idTextProperty());

src/main/java/org/jabref/gui/EntryTypeViewModel.java

@@ -25,7 +25,7 @@
 import org.jabref.logic.l10n.Localization;
 import org.jabref.model.entry.BibEntry;
 import org.jabref.model.strings.StringUtil;
-import org.jabref.preferences.JabRefPreferences;
+import org.jabref.preferences.PreferencesService;
 
 import de.saxsys.mvvmfx.utils.validation.FunctionBasedValidator;
 import de.saxsys.mvvmfx.utils.validation.ValidationMessage;
@@ -38,7 +38,7 @@ public class EntryTypeViewModel {
 
     private static final Logger LOGGER = LoggerFactory.getLogger(EntryTypeViewModel.class);
 
-    private final JabRefPreferences prefs;
+    private final PreferencesService preferencesService;
     private final BooleanProperty searchingProperty = new SimpleBooleanProperty();
     private final BooleanProperty searchSuccesfulProperty = new SimpleBooleanProperty();
     private final ObjectProperty<IdBasedFetcher> selectedItemProperty = new SimpleObjectProperty<>();
@@ -51,9 +51,12 @@ public class EntryTypeViewModel {
     private final Validator idFieldValidator;
     private final StateManager stateManager;
 
-    public EntryTypeViewModel(JabRefPreferences preferences, LibraryTab libraryTab, DialogService dialogService, StateManager stateManager) {
+    public EntryTypeViewModel(PreferencesService preferences,
+                              LibraryTab libraryTab,
+                              DialogService dialogService,
+                              StateManager stateManager) {
         this.libraryTab = libraryTab;
-        this.prefs = preferences;
+        this.preferencesService = preferences;
         this.dialogService = dialogService;
         this.stateManager = stateManager;
         fetchers.addAll(WebFetchers.getIdBasedFetchers(preferences.getImportFormatPreferences()));
@@ -86,12 +89,12 @@ public BooleanProperty getFocusAndSelectAllProperty() {
     }
 
     public void storeSelectedFetcher() {
-        prefs.setIdBasedFetcherForEntryGenerator(selectedItemProperty.getValue().getName());
+        preferencesService.storeIdBasedFetcherForEntryGenerator(selectedItemProperty.getValue().getName());
     }
 
     private IdBasedFetcher getLastSelectedFetcher() {
-        return fetchers.stream().filter(fetcher -> fetcher.getName().equals(prefs.getIdBasedFetcherForEntryGenerator()))
-                       .findFirst().orElse(new DoiFetcher(prefs.getImportFormatPreferences()));
+        return fetchers.stream().filter(fetcher -> fetcher.getName().equals(preferencesService.getIdBasedFetcherForEntryGenerator()))
+                       .findFirst().orElse(new DoiFetcher(preferencesService.getImportFormatPreferences()));
     }
 
     public ListProperty<IdBasedFetcher> fetcherItemsProperty() {
@@ -170,7 +173,7 @@ public void runFetcherWorker() {
                     }
                 } else {
                     // Regenerate CiteKey of imported BibEntry
-                    new CitationKeyGenerator(libraryTab.getBibDatabaseContext(), prefs.getCitationKeyPatternPreferences()).generateAndSetKey(entry);
+                    new CitationKeyGenerator(libraryTab.getBibDatabaseContext(), preferencesService.getCitationKeyPatternPreferences()).generateAndSetKey(entry);
                     libraryTab.insertEntry(entry);
                 }
                 searchSuccesfulProperty.set(true);

src/main/java/org/jabref/gui/Globals.java

@@ -73,7 +73,7 @@ public class Globals {
     public static ExporterFactory exportFactory;
     public static CountingUndoManager undoManager = new CountingUndoManager();
     public static BibEntryTypesManager entryTypesManager = new BibEntryTypesManager();
-    public static ClipBoardManager clipboardManager = new ClipBoardManager();
+    public static ClipBoardManager clipboardManager = new ClipBoardManager(prefs);
 
     // Key binding preferences
     private static KeyBindingRepository keyBindingRepository;
@@ -97,7 +97,7 @@ public static void startBackgroundTasks() {
         Globals.fileUpdateMonitor = new DefaultFileUpdateMonitor();
         JabRefExecutorService.INSTANCE.executeInterruptableTask(Globals.fileUpdateMonitor, "FileUpdateMonitor");
 
-        if (Globals.prefs.shouldCollectTelemetry() && !GraphicsEnvironment.isHeadless()) {
+        if (Globals.prefs.getTelemetryPreferences().shouldCollectTelemetry() && !GraphicsEnvironment.isHeadless()) {
             startTelemetryClient();
         }
     }
@@ -112,7 +112,7 @@ private static void stopTelemetryClient() {
     private static void startTelemetryClient() {
         TelemetryConfiguration telemetryConfiguration = TelemetryConfiguration.getActive();
         telemetryConfiguration.setInstrumentationKey(Globals.BUILD_INFO.azureInstrumentationKey);
-        telemetryConfiguration.setTrackingIsDisabled(!Globals.prefs.shouldCollectTelemetry());
+        telemetryConfiguration.setTrackingIsDisabled(!Globals.prefs.getTelemetryPreferences().shouldCollectTelemetry());
         telemetryClient = new TelemetryClient(telemetryConfiguration);
         telemetryClient.getContext().getProperties().put("JabRef version", Globals.BUILD_INFO.version.toString());
         telemetryClient.getContext().getProperties().put("Java version", StandardSystemProperty.JAVA_VERSION.value());

src/main/java/org/jabref/gui/JabRefDialogService.java

@@ -40,7 +40,7 @@
 import org.jabref.gui.util.FileDialogConfiguration;
 import org.jabref.gui.util.ZipFileChooser;
 import org.jabref.logic.l10n.Localization;
-import org.jabref.preferences.JabRefPreferences;
+import org.jabref.preferences.PreferencesService;
 
 import com.jfoenix.controls.JFXSnackbar;
 import com.jfoenix.controls.JFXSnackbar.SnackbarEvent;
@@ -67,12 +67,12 @@ public class JabRefDialogService implements DialogService {
 
     private static final Duration TOAST_MESSAGE_DISPLAY_TIME = Duration.millis(3000);
     private static final Logger LOGGER = LoggerFactory.getLogger(JabRefDialogService.class);
-    private static JabRefPreferences preferences;
+    private static PreferencesService preferences;
 
     private final Window mainWindow;
     private final JFXSnackbar statusLine;
 
-    public JabRefDialogService(Window mainWindow, Pane mainPane, JabRefPreferences preferences) {
+    public JabRefDialogService(Window mainWindow, Pane mainPane, PreferencesService preferences) {
         this.mainWindow = mainWindow;
         this.statusLine = new JFXSnackbar(mainPane);
         JabRefDialogService.preferences = preferences;