New pip installation

environment.yml

@@ -0,0 +1,14 @@
+name: sharpy
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - eigen
+  - libopenblas
+  - libblas
+  - libcblas
+  - liblapack
+  - libgfortran
+  - libgcc
+  - libgfortran-ng
+  - python=3.10

pyproject.toml

@@ -0,0 +1,6 @@
+[build-system]
+requires = [
+    "setuptools",
+    #"scikit-build>=0.13",
+    "cmake>=3.14.3"
+    ]

setup.py

@@ -1,7 +1,98 @@
-from setuptools import setup, find_packages
+from setuptools import setup, find_packages, Extension, Command
+#from skbuild import setup
+from setuptools.command.build_ext import build_ext
+import subprocess
+
 import re
 import os
 
+class CMakeBuildExt(build_ext):
+    """Custom command to build Submodules packages during installation."""
+
+    # def copy_extensions_to_source(self):
+    #     "Override the method to prevent copying package files"
+    #     pass
+
+    def finalize_options(self):
+        super().finalize_options()
+        # Process and use os.environ['CUSTOM_CONFIG_SETTINGS'] as needed
+        self.pip_nobuild = os.environ.get('PIP_NOBUILD')
+
+    def run(self):
+
+        package_dir = os.path.dirname(os.path.abspath(__file__))
+        build_dir = package_dir + "/build"
+        cmake_args = []
+        if self.pip_nobuild=="yes":
+            pass
+        else:
+            if not os.path.isdir(build_dir):
+                os.makedirs(build_dir)
+            subprocess.check_call(
+                ["cmake", ".."] + cmake_args, cwd=build_dir
+            )
+            subprocess.check_call(
+                ["make", "install", "-j4"], cwd=build_dir
+            )
+
+        super().run()
+
+def run():
+
+    pip_nobuild = os.environ.get('PIP_NOBUILD')
+    package_dir = os.path.dirname(os.path.abspath(__file__))
+    build_dir = package_dir + "/build"
+    cmake_args = []
+    if pip_nobuild=="yes":
+        pass
+    else:
+        if not os.path.isdir(build_dir):
+            os.makedirs(build_dir)
+        subprocess.check_call(
+            ["cmake", ".."] + cmake_args, cwd=build_dir
+        )
+        subprocess.check_call(
+            ["make", "install", "-j4"], cwd=build_dir
+        )
+
+class BuildCommand(Command):
+    """Custom command to build Submodules packages without installation."""
+
+    description = 'Build Submodules in lib packages'
+    user_options = [
+        ('cmake-args=', None, 'Additional CMake arguments'),
+    ]
+
+    def initialize_options(self):
+        self.cmake_args = None
+
+    def finalize_options(self):
+        pass
+
+    def run(self):
+        # Run the CMake build step with additional cmake_args
+        package_dir = os.path.dirname(os.path.abspath(__file__))
+        build_dir = package_dir + "/build"
+        if not os.path.isdir(build_dir):
+            os.makedirs(build_dir)
+        if self.cmake_args is not None:
+            subprocess.check_call(
+                ["cmake", f"{self.cmake_args}", ".."], cwd=build_dir
+            )
+        else:
+            subprocess.check_call(
+                ["cmake", ".."], cwd=build_dir
+            )
+
+        subprocess.check_call(
+            ["make", "install", "-j4"], cwd=build_dir
+        )
+
+ext_modules = [
+    Extension('lib', []),
+    # Add more Extension instances for additional extension modules
+]
+
 this_directory = os.path.abspath(os.path.dirname(__file__))
 __version__ = re.findall(
     r"""__version__ = ["']+([0-9\.]*)["']+""",
@@ -10,7 +101,7 @@
 
 with open(os.path.join(this_directory, "README.md"), encoding="utf-8") as f:
     long_description = f.read()
-
+run()
 setup(
     name="sharpy",
     version=__version__,
@@ -25,13 +116,52 @@
     author_email="",
     url="https://github.com/ImperialCollegeLondon/sharpy",
     license="BSD 3-Clause License",
+    #ext_modules=ext_modules,
+    cmdclass={#"build_ext": CMakeBuildExt,
+              "build_subm": BuildCommand},
     packages=find_packages(
         where='./',
         include=['sharpy*'],
         exclude=['tests']
         ),
+    # data_files=[
+    #     ("./lib/UVLM/lib", ["libuvlm.so"]),
+    #     ("./lib/xbeam/lib", ["libxbeam.so"])
+    #     ],
+    python_requires=">=3.8",
     install_requires=[
+        "numpy",
+        "configobj",
+        "h5py",
+        "scipy",
+        "sympy",
+        "matplotlib",
+        "colorama",
+        "dill",
+        "jupyterlab",
+        "mayavi", #tvtk
+        "pandas",
+        "control",
+        # For pandas excel reader.
+        "openpyxl>=3.0.10",
+        "lxml>=4.4.1",
+        "PySocks",
+        "PyYAML"
     ],
+    extras_require={
+        "docs": [
+            "sphinx",
+            "recommonmark>=0.6.0",
+            "sphinx_rtd_theme>=0.4.3",
+            "nbsphinx>=0.4.3"
+                 ],
+        "all": [
+            "sphinx",
+            "recommonmark>=0.6.0",
+            "sphinx_rtd_theme>=0.4.3",
+            "nbsphinx>=0.4.3"
+                 ],
+    },
     classifiers=[
         "Operating System :: Linux, Mac OS",
         "Programming Language :: Python, C++",