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🏗️ Maintenance/week 25: updates of testing, tooling and vulnerable libraries #2394

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Jun 21, 2021
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6b2024b
Updated constraints due to vulnerable dependences
pcrespov Jun 21, 2021
f7c1ea3
api/tests deps upgrades
pcrespov Jun 21, 2021
7729f07
models-lib deps upgrade
pcrespov Jun 21, 2021
c13fb8c
service-integration lib deps upgrade
pcrespov Jun 21, 2021
1211d14
service-lib deps upgrade
pcrespov Jun 21, 2021
1082491
simcore-sdk deps upgrade
pcrespov Jun 21, 2021
bfb9014
api-server deps upgrade
pcrespov Jun 21, 2021
bfc6247
tests/swarm-deploy deps upgrade
pcrespov Jun 21, 2021
76e6435
tests/public-api deps upgrade
pcrespov Jun 21, 2021
b3db40b
tests/environment-setup upgrade
pcrespov Jun 21, 2021
79a5b93
tests/e2e upgrade
pcrespov Jun 21, 2021
e39ddd1
postgress-database upgrades
pcrespov Jun 21, 2021
861bfb0
catalog upgrade
pcrespov Jun 21, 2021
f682f51
diurectorv2 upgrade
pcrespov Jun 21, 2021
df3a8c1
dynamic-sidecar upgrade
pcrespov Jun 21, 2021
3555bba
sidecar upgrade
pcrespov Jun 21, 2021
f005b1b
webserver upgrade
pcrespov Jun 21, 2021
886552b
vulnerabilities urllib3 and aiohttp
pcrespov Jun 21, 2021
8a09f6d
storage t&t upgrade
pcrespov Jun 21, 2021
960b1ec
minor fixes
pcrespov Jun 21, 2021
84443f6
mipy install stub packages
pcrespov Jun 21, 2021
b22d0a7
Fixes missing dependency in simcore-sdk with pg migration extension
pcrespov Jun 21, 2021
4e46b07
sidecar missing dependency from simcore-sdk
pcrespov Jun 21, 2021
8b4977c
fixes type stubs package installations
pcrespov Jun 21, 2021
b26b3f7
updates paths to global configs
pcrespov Jun 21, 2021
36ddfe4
updates condestyle
pcrespov Jun 21, 2021
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15 changes: 9 additions & 6 deletions api/tests/requirements.txt
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,7 @@
#
aiohttp==3.7.4.post0
# via
# -c ../../requirements/constraints.txt
# -r requirements.in
# pytest-aiohttp
async-timeout==3.0.1
Expand All @@ -24,7 +25,7 @@ coverage==5.5
# pytest-cov
dictpath==0.1.3
# via openapi-core
idna==3.1
idna==3.2
# via yarl
iniconfig==1.1.1
# via pytest
Expand All @@ -38,13 +39,13 @@ jsonschema==3.2.0
# openapi-spec-validator
lazy-object-proxy==1.6.0
# via openapi-core
more-itertools==8.7.0
more-itertools==8.8.0
# via openapi-core
multidict==5.1.0
# via
# aiohttp
# yarl
openapi-core==0.14.1
openapi-core==0.14.2
# via -r requirements.in
openapi-schema-validator==0.1.5
# via
Expand All @@ -68,7 +69,7 @@ pyrsistent==0.17.3
# via jsonschema
pytest-aiohttp==0.3.0
# via -r requirements.in
pytest-cov==2.11.1
pytest-cov==2.12.1
# via -r requirements.in
pytest-instafail==0.4.2
# via -r requirements.in
Expand All @@ -95,10 +96,12 @@ six==1.16.0
termcolor==1.1.0
# via pytest-sugar
toml==0.10.2
# via pytest
# via
# pytest
# pytest-cov
typing-extensions==3.10.0.0
# via aiohttp
werkzeug==2.0.0
werkzeug==2.0.1
# via openapi-core
yarl==1.6.3
# via aiohttp
Expand Down
2 changes: 1 addition & 1 deletion packages/models-library/requirements/_base.txt
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
#
dnspython==2.1.0
# via email-validator
email-validator==1.1.2
email-validator==1.1.3
# via pydantic
idna==2.10
# via
Expand Down
19 changes: 11 additions & 8 deletions packages/models-library/requirements/_test.txt
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,9 @@
# pip-compile --output-file=requirements/_test.txt requirements/_test.in
#
aiohttp==3.7.4.post0
# via pytest-aiohttp
# via
# -c requirements/../../../requirements/constraints.txt
# pytest-aiohttp
astroid==2.5.6
# via pylint
async-timeout==3.0.1
Expand All @@ -14,7 +16,7 @@ attrs==21.2.0
# via
# aiohttp
# pytest
certifi==2020.12.5
certifi==2021.5.30
# via requests
chardet==4.0.0
# via
Expand All @@ -25,7 +27,7 @@ coverage==5.5
# -r requirements/_test.in
# coveralls
# pytest-cov
coveralls==3.0.1
coveralls==3.1.0
# via -r requirements/_test.in
docopt==0.6.2
# via coveralls
Expand All @@ -38,7 +40,7 @@ idna==2.10
# yarl
iniconfig==1.1.1
# via pytest
isort==5.8.0
isort==5.9.0
# via pylint
lazy-object-proxy==1.6.0
# via astroid
Expand All @@ -61,21 +63,21 @@ pprintpp==0.4.0
# via pytest-icdiff
py==1.10.0
# via pytest
pylint==2.8.2
pylint==2.8.3
# via -r requirements/_test.in
pyparsing==2.4.7
# via packaging
pytest-aiohttp==0.3.0
# via -r requirements/_test.in
pytest-cov==2.11.1
pytest-cov==2.12.1
# via -r requirements/_test.in
pytest-icdiff==0.5
# via -r requirements/_test.in
pytest-instafail==0.4.2
# via -r requirements/_test.in
pytest-mock==3.6.1
# via -r requirements/_test.in
pytest-runner==5.3.0
pytest-runner==5.3.1
# via -r requirements/_test.in
pytest-sugar==0.9.4
# via -r requirements/_test.in
Expand All @@ -100,11 +102,12 @@ toml==0.10.2
# via
# pylint
# pytest
# pytest-cov
typing-extensions==3.10.0.0
# via
# -c requirements/_base.txt
# aiohttp
urllib3==1.26.4
urllib3==1.26.5
# via
# -c requirements/../../../requirements/constraints.txt
# requests
Expand Down
16 changes: 8 additions & 8 deletions packages/models-library/requirements/_tools.txt
Original file line number Diff line number Diff line change
Expand Up @@ -8,23 +8,23 @@ appdirs==1.4.4
# via
# black
# virtualenv
black==21.5b1
black==21.6b0
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# via -r requirements/../../../requirements/devenv.txt
bump2version==1.0.1
# via -r requirements/../../../requirements/devenv.txt
cfgv==3.2.0
cfgv==3.3.0
# via pre-commit
click==8.0.0
click==8.0.1
# via
# black
# pip-tools
distlib==0.3.1
distlib==0.3.2
# via virtualenv
filelock==3.0.12
# via virtualenv
identify==2.2.4
identify==2.2.10
# via pre-commit
isort==5.8.0
isort==5.9.0
# via
# -c requirements/_test.txt
# -r requirements/../../../requirements/devenv.txt
Expand All @@ -38,7 +38,7 @@ pep517==0.10.0
# via pip-tools
pip-tools==6.1.0
# via -r requirements/../../../requirements/devenv.txt
pre-commit==2.12.1
pre-commit==2.13.0
# via -r requirements/../../../requirements/devenv.txt
pyyaml==5.4.1
# via
Expand All @@ -55,7 +55,7 @@ toml==0.10.2
# black
# pep517
# pre-commit
virtualenv==20.4.6
virtualenv==20.4.7
# via pre-commit

# The following packages are considered to be unsafe in a requirements file:
Expand Down
2 changes: 1 addition & 1 deletion packages/postgres-database/requirements/_base.txt
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ idna==2.10
# yarl
multidict==5.1.0
# via yarl
psycopg2-binary==2.8.6
psycopg2-binary==2.9.1
# via sqlalchemy
sqlalchemy[postgresql_psycopg2binary]==1.3.24
# via
Expand Down
8 changes: 8 additions & 0 deletions packages/postgres-database/requirements/_migration.in
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,14 @@
-c ../../../requirements/constraints.txt
-c _base.txt

# There are incompatible versions in the resolved dependencies:
# websocket-client==1.1.0 (from -c requirements/_migration.txt (line 51))
# websocket-client<1,>=0.32.0 (from docker-compose==1.29.1->-c requirements/../../../requirements/constraints.txt (line 25))
websocket-client<1,>=0.32.0

# ----------------------


urllib3

alembic
Expand Down
16 changes: 9 additions & 7 deletions packages/postgres-database/requirements/_migration.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,13 +4,13 @@
#
# pip-compile --output-file=requirements/_migration.txt requirements/_migration.in
#
alembic==1.6.2
alembic==1.6.5
# via -r requirements/_migration.in
certifi==2020.12.5
certifi==2021.5.30
# via requests
chardet==4.0.0
# via requests
click==8.0.0
click==8.0.1
# via -r requirements/_migration.in
docker==5.0.0
# via -r requirements/_migration.in
Expand All @@ -20,9 +20,9 @@ idna==2.10
# requests
mako==1.1.4
# via alembic
markupsafe==2.0.0
markupsafe==2.0.1
# via mako
psycopg2-binary==2.8.6
psycopg2-binary==2.9.1
# via
# -c requirements/_base.txt
# sqlalchemy
Expand All @@ -44,10 +44,12 @@ sqlalchemy[postgresql_psycopg2binary]==1.3.24
# alembic
tenacity==7.0.0
# via -r requirements/_migration.in
urllib3==1.26.4
urllib3==1.26.5
# via
# -c requirements/../../../requirements/constraints.txt
# -r requirements/_migration.in
# requests
websocket-client==0.59.0
# via docker
# via
# -r requirements/_migration.in
# docker
29 changes: 16 additions & 13 deletions packages/postgres-database/requirements/_test.txt
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,9 @@
# pip-compile --output-file=requirements/_test.txt requirements/_test.in
#
aiohttp==3.7.4.post0
# via pytest-aiohttp
# via
# -c requirements/../../../requirements/constraints.txt
# pytest-aiohttp
aiopg[sa]==1.2.1
# via -r requirements/_test.in
astroid==2.5.6
Expand All @@ -14,15 +16,15 @@ async-timeout==3.0.1
# via
# aiohttp
# aiopg
attrs==20.3.0
attrs==21.2.0
# via
# aiohttp
# jsonschema
# pytest
# pytest-docker
bcrypt==3.2.0
# via paramiko
certifi==2020.12.5
certifi==2021.5.30
# via
# -c requirements/_migration.txt
# requests
Expand All @@ -41,7 +43,7 @@ coverage==5.5
# -r requirements/_test.in
# coveralls
# pytest-cov
coveralls==3.0.1
coveralls==3.1.0
# via -r requirements/_test.in
cryptography==3.4.7
# via
Expand All @@ -63,7 +65,7 @@ docopt==0.6.2
# via
# coveralls
# docker-compose
faker==8.1.4
faker==8.8.1
# via -r requirements/_test.in
idna==2.10
# via
Expand All @@ -73,7 +75,7 @@ idna==2.10
# yarl
iniconfig==1.1.1
# via pytest
isort==5.8.0
isort==5.9.0
# via pylint
jsonschema==3.2.0
# via docker-compose
Expand All @@ -92,7 +94,7 @@ paramiko==2.7.2
# via docker
pluggy==0.13.1
# via pytest
psycopg2-binary==2.8.6
psycopg2-binary==2.9.1
# via
# -c requirements/_base.txt
# -c requirements/_migration.txt
Expand All @@ -102,7 +104,7 @@ py==1.10.0
# via pytest
pycparser==2.20
# via cffi
pylint==2.8.2
pylint==2.8.3
# via -r requirements/_test.in
pynacl==1.4.0
# via paramiko
Expand All @@ -112,13 +114,13 @@ pyrsistent==0.17.3
# via jsonschema
pytest-aiohttp==0.3.0
# via -r requirements/_test.in
pytest-cov==2.11.1
pytest-cov==2.12.1
# via -r requirements/_test.in
pytest-docker==0.10.1
pytest-docker==0.10.3
# via -r requirements/_test.in
pytest-instafail==0.4.2
# via -r requirements/_test.in
pytest-runner==5.3.0
pytest-runner==5.3.1
# via -r requirements/_test.in
pytest==6.2.4
# via
Expand All @@ -131,7 +133,7 @@ python-dateutil==2.8.1
# via
# -c requirements/_migration.txt
# faker
python-dotenv==0.17.1
python-dotenv==0.18.0
# via docker-compose
pyyaml==5.4.1
# via
Expand Down Expand Up @@ -167,9 +169,10 @@ toml==0.10.2
# via
# pylint
# pytest
# pytest-cov
typing-extensions==3.10.0.0
# via aiohttp
urllib3==1.26.4
urllib3==1.26.5
# via
# -c requirements/../../../requirements/constraints.txt
# -c requirements/_migration.txt
Expand Down
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