change codeSystem to use inactive as well as deprecated

_updatePublisher.sh

@@ -117,13 +117,16 @@ if [[ $skipPrompts == true ]] || [[ $response =~ ^[yY].*$ ]]; then
 
   curl -L $gencont_sh_url -o /tmp/_gencontinuous.new
   cp /tmp/_gencontinuous.new _gencontinuous.sh
+  chmod +x _gencontinuous.sh
   rm /tmp/_gencontinuous.new
 
   curl -L $gen_sh_url -o /tmp/_genonce.new
   cp /tmp/_genonce.new _genonce.sh
+  chmod +x _genonce.sh
   rm  /tmp/_genonce.new
 
   curl -L $update_sh_url -o /tmp/_updatePublisher.new
   cp /tmp/_updatePublisher.new _updatePublisher.sh
+  chmod +x _updatePublisher.sh
   rm /tmp/_updatePublisher.new
 fi

input/ignoreWarnings.txt

@@ -1,21 +1,5 @@
 == Suppressed Messages ==
 
 # The valueset import the XDS-I FormatCode from dicom the SOP id for KOS. But I get a warning from the IG build tool because DICOM does not have this code in their DCM, eventhough XDS-I indicates this is in that code system. 
-The code 1.2.840.10008.5.1.4.1.1.88.59 is not valid in the system http://dicom.nema.org/resources/ontology/DCM
-
-# the Implementation Guide is expected
-Validate resource against profile http://hl7.org/fhir/StructureDefinition/ImplementationGuide
-
-# There is provenance use for history
-Validate resource against profile http://hl7.org/fhir/StructureDefinition/Bundle
-Validate resource against profile http://hl7.org/fhir/StructureDefinition/Provenance
-
-# There is a code system
-Validate resource against profile http://hl7.org/fhir/StructureDefinition/CodeSystem
-
-# There is a valueset
-Validate resource against profile http://hl7.org/fhir/StructureDefinition/ValueSet
-
-# New html fragment pages that don't add value because FormatCode IG is just vocabulary
-WARNING: 1: The HTML fragment 'ip-statements.xhtml' is not included anywhere in the produced implementation guide
-WARNING: 4: The HTML fragment 'globals-table.xhtml' is not included anywhere in the produced implementation guide
+WARNING: ValueSet/formatcode: ValueSet.compose.include[2].concept[0]: The code '1.2.840.10008.5.1.4.1.1.88.59' is not valid in the system http://dicom.nema.org/resources/ontology/DCM
+INFORMATION: ValueSet/formatcode: ValueSet.compose.include[2].concept[0]: Unknown code '1.2.840.10008.5.1.4.1.1.88.59' in the CodeSystem 'http://dicom.nema.org/resources/ontology/DCM' version '01'

input/pagecontent/index.md

@@ -24,3 +24,10 @@ The main sections of this IG are:
 
 {% include dependency-table.xhtml %}
 
+#### IP Statements
+
+{% include ip-statements.xhtml %}
+
+#### Globals
+
+{% include globals-table.xhtml %}

input/resources/Bundle-history-IHE-formatcode.codesystem.xml

@@ -5,7 +5,58 @@
 	<type value="collection"/>
 	<!-- includes Provenance record for each revision of the IHE FormatCodes -->
 	<entry xmlns="http://hl7.org/fhir">
-		<fullUrl value="https://profiles.ihe.net/fhir/ihe.formatcode.fhir/Provenance/20220814"/>
+		<fullUrl value="urn:oid:1.3.6.1.4.1.19376.1.2.3.1.20240205.1"/>
+		<resource>
+			<Provenance>
+				<id value="formatcode-provenance-20240205"/>
+				<target>
+					<reference value="http://ihe.net/fhir/ihe.formatcode.fhir/CodeSystem/formatcode"/>
+					<type value="CodeSystem"/>
+				</target>
+				<occurredPeriod>
+					<end value="2024-02-05"/>
+				</occurredPeriod>
+				<recorded value="2024-02-05T13:00:00.0000Z"/>
+				<reason>
+					<coding>
+						<system value="http://terminology.hl7.org/CodeSystem/v3-ActReason"/>
+						<code value="METAMGT"/>
+					</coding>
+					<text value="Change the non-deprecated to status of active."/>
+				</reason>
+				<activity>
+					<coding>
+						<system value="http://terminology.hl7.org/CodeSystem/v3-DataOperation"/>
+						<code value="UPDATE"/>
+					</coding>
+				</activity>
+				<agent>
+					<type>
+						<coding>
+							<system value="http://terminology.hl7.org/CodeSystem/provenance-participant-type"/>
+							<code value="author"/>
+						</coding>
+					</type>
+					<who>
+						<display value="John Moehrke"/>
+					</who>
+				</agent>
+				<agent>
+					<type>
+						<coding>
+							<system value="http://terminology.hl7.org/CodeSystem/provenance-participant-type"/>
+							<code value="custodian"/>
+						</coding>
+					</type>
+					<who>
+						<display value="IHE ITI Domain"/>
+					</who>
+				</agent>
+			</Provenance>
+		</resource>
+	</entry>	
+	<entry xmlns="http://hl7.org/fhir">
+		<fullUrl value="urn:oid:1.3.6.1.4.1.19376.1.2.3.1.20220814.1"/>
 		<resource>
 			<Provenance>
 				<id value="formatcode-provenance-20220814"/>

input/resources/Bundle-history-IHE-formatcode.valueset.xml

@@ -5,7 +5,7 @@
 	<type value="collection"/>
 	<!-- includes Provenance record for each revision of the IHE FormatCode ValueSet-->
 	<entry xmlns="http://hl7.org/fhir">
-		<fullUrl value="https://profiles.ihe.net/fhir/ihe.formatcode.fhir/Provenance/20220815"/>
+		<fullUrl value="urn:oid:1.3.6.1.4.1.19376.1.2.3.2.20220815"/>
 		<resource>
 			<Provenance>
 				<id value="formatcode-provenance-20220815"/>
@@ -56,7 +56,7 @@
 		</resource>
 	</entry>	
 	<entry xmlns="http://hl7.org/fhir">
-		<fullUrl value="https://profiles.ihe.net/fhir/ihe.formatcode.fhir/Provenance/20201028"/>
+		<fullUrl value="urn:oid:1.3.6.1.4.1.19376.1.2.3.2.20201028"/>
 		<resource>
 			<Provenance>
 				<id value="formatcode-provenance-20201028"/>