store.write_result: ValueError: 1 indexing arguments for 0 dimensions

[dweindl]

I just encountered ValueError: 1 indexing arguments for 0 dimensions below store.write_result when saving profiling results in https://github.com/ICB-DCM/pyPESTO/actions/runs/6940677433/job/18880030097.

Seems like some inputs aren't checked properly.

Full stack (doc/example/amici.ipynb):

nbclient.exceptions.CellExecutionError: An error occurred while executing the following cell:
------------------
# create temporary file
fn = tempfile.mktemp(".h5")

# write result with write_result function.
# Choose which parts of the result object to save with
# corresponding booleans.
store.write_result(
    result=result,
    filename=fn,
    problem=True,
    optimize=True,
    sample=True,
    profile=True,
)
------------------


---------------------------------------------------------------------------
ValueError                                Traceback (most recent call last)
Cell In[39], line 7
      2 fn = tempfile.mktemp(".h5")
      4 # write result with write_result function.
      5 # Choose which parts of the result object to save with
      6 # corresponding booleans.
----> 7 store.write_result(
      8     result=result,
      9     filename=fn,
     10     problem=True,
     11     optimize=True,
     12     sample=True,
     13     profile=True,
     14 )

File ~/work/pyPESTO/pyPESTO/.tox/notebooks1/lib/python3.9/site-packages/pypesto/store/save_to_hdf5.py:298, in write_result(result, filename, overwrite, problem, optimize, profile, sample)
    296 if profile:
    297     pypesto_profile_writer = ProfileResultHDF5Writer(filename)
--> 298     pypesto_profile_writer.write(result, overwrite=overwrite)
    300 if sample:
    301     pypesto_sample_writer = SamplingResultHDF5Writer(filename)

File ~/work/pyPESTO/pyPESTO/.tox/notebooks1/lib/python3.9/site-packages/pypesto/store/save_to_hdf5.py:244, in ProfileResultHDF5Writer.write(self, result, overwrite)
    242 for key in parameter_profile.keys():
    243     if isinstance(parameter_profile[key], np.ndarray):
--> 244         write_float_array(
    245             result_grp, key, parameter_profile[key]
    246         )
    247     elif parameter_profile[key] is not None:
    248         result_grp.attrs[key] = parameter_profile[key]

File ~/work/pyPESTO/pyPESTO/.tox/notebooks1/lib/python3.9/site-packages/pypesto/store/hdf5.py:72, in write_float_array(f, path, values, dtype)
     70 else:
     71     dset = f[path]
---> 72 dset[:] = values

File h5py/_objects.pyx:54, in h5py._objects.with_phil.wrapper()

File h5py/_objects.pyx:55, in h5py._objects.with_phil.wrapper()

File ~/work/pyPESTO/pyPESTO/.tox/notebooks1/lib/python3.9/site-packages/h5py/_hl/dataset.py:965, in Dataset.__setitem__(self, args, val)
    962     mtype = None
    964 # Perform the dataspace selection
--> 965 selection = sel.select(self.shape, args, dataset=self)
    967 if selection.nselect == 0:
    968     return

File ~/work/pyPESTO/pyPESTO/.tox/notebooks1/lib/python3.9/site-packages/h5py/_hl/selections.py:82, in select(shape, args, dataset)
     79     space = h5s.create_simple(shape)
     80     selector = _selector.Selector(space)
---> 82 return selector.make_selection(args)

File h5py/_selector.pyx:282, in h5py._selector.Selector.make_selection()

File h5py/_selector.pyx:107, in h5py._selector.Selector.apply_args()

ValueError: 1 indexing arguments for 0 dimensions