What's Changed
- fixed bug in pypi-publish workflow by @avantikalal in #35
- Poisson losses bug fixes #31 by @MuhammedHasan in #32
- add python gitignore by @MuhammedHasan in #25
- Add support for half precision (bf16 and fp16) and on device model creation by @MuhammedHasan in #26
- replaced .A with .toarray() by @avantikalal in #37
- allow custom blacklist file by @avantikalal in #36
- replace bpnetlite with tangermeme by @avantikalal in #15
- updated pre-commit hooks by @ekageyama in #44
- Support alternative normalization methods by @MuhammedHasan in #42
- added preprint link by @avantikalal in #49
- Pin torchmetrics version by @gokceneraslan in #51
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #53
- Add precision to the pl.Trainer constructors by @gokceneraslan in #50
- fixed and updated plot_tracks by @avantikalal in #67
- Saliency by @avantikalal in #71
- Flash Attention support by @suragnair in #78
- updated merge_intervals function to account for strand by @avantikalal in #66
- Updated motif processing to Tangermeme 0.4 by @avantikalal in #69
- add multiomial axis option to poisson multinomial loss by @avantikalal in #79
New Contributors
- @MuhammedHasan made their first contribution in #32
- @ekageyama made their first contribution in #44
- @pre-commit-ci made their first contribution in #53
Full Changelog: v1.0.2...v1.0.3
Contributors
gokceneraslan, ekageyama, and 4 other contributors