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23 Open 26 Closed
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Issues list

grelu.interpret.motifs.scan_sequence fails if you pass an attribution AND there are no motif matches found
#98 opened Feb 5, 2025 by dagarfield
Add contribution guide documentation Improvements or additions to documentation v1.1
#94 opened Jan 31, 2025 by avantikalal
@avantikalal
Enable genomicarrays backend for bigwigdataloader v1.1
#92 opened Jan 31, 2025 by avantikalal
@avantikalal
Different inference results under different batch size bug Something isn't working
#85 opened Dec 10, 2024 by HelloWorldLTY
2
Questions about early stopping enhancement New feature or request
#84 opened Nov 25, 2024 by HelloWorldLTY
1
Incompatibility between modisco with ISM and Specificify transform with subtract function bug Something isn't working v1.1
#80 opened Nov 8, 2024 by dagarfield
1
Loading custom models v1.1
#76 opened Oct 22, 2024 by saninta0212
3
Support indels enhancement New feature or request
#65 opened Oct 15, 2024 by avantikalal
@avantikalal
Add a function to plot motif logos enhancement New feature or request v1.1
#62 opened Oct 15, 2024 by avantikalal
@avantikalal
Add attribution score for motif hits enhancement New feature or request v1.1
#60 opened Oct 14, 2024 by avantikalal
@avantikalal
Check chromosomes when fine tuning? enhancement New feature or request
#59 opened Oct 14, 2024 by avantikalal
@avantikalal
Remove pretrainedmodel classes enhancement New feature or request v1.1
#58 opened Oct 14, 2024 by avantikalal
@avantikalal
Save gReLU version in checkpoints enhancement New feature or request v1.1
#57 opened Oct 14, 2024 by avantikalal
@avantikalal
Enable deepshap for enformer models enhancement New feature or request
#56 opened Oct 14, 2024 by avantikalal
@avantikalal
Automatically catch intervals which extend beyond the chr? enhancement New feature or request v1.1
#54 opened Oct 10, 2024 by cafletezbrant
@avantikalal
3
How to change the location of genome downloading path? question Further information is requested v1.1
#52 opened Oct 5, 2024 by HelloWorldLTY
guidelines to implement custom models enhancement New feature or request v1.1
#47 opened Sep 19, 2024 by MiqG
1
Questions about reading variants
#45 opened Sep 12, 2024 by HelloWorldLTY
3
Making train_params and model_params functional to add documentation and avoid duplication enhancement New feature or request v1.1
#38 opened Aug 5, 2024 by gokceneraslan
@avantikalal
6
Update doc string and input allowances for grelu.sequence.utils.resize bug Something isn't working documentation Improvements or additions to documentation v1.1
#34 opened Jul 26, 2024 by dagarfield
@avantikalal
Ref and alt reversed in VEP tutorial v1.1
#33 opened Jul 26, 2024 by dagarfield
Loading models from the checkpoint leads to package version conflicts
#28 opened Jul 19, 2024 by MuhammedHasan
@ekageyama
Training with poisson_multinomial + label preprocessing
#17 opened Jul 12, 2024 by fteufel
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