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Merge pull request #330 from GSTT-CSC/329-the-cli-has-not-been-update…
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…d-for-the-new-tasks

added new tasks to the CLI
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@Lucrezia-Cester
Lucrezia-Cester authored Apr 12, 2023
2 parents 61f7c8f + 85156d0 commit a7a7f7c
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2 changes: 1 addition & 1 deletion hazenlib/__init__.py
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'Measured_slice_width' is an optional argument for the SNR function.
'Log' is an optional argument that allows users to set the severity of the logs.
<task> snr | slice_position | slice_width | spatial_resolution | uniformity | ghosting | relaxometry | snr_map |
acr_ghosting | acr_uniformity |
acr_ghosting | acr_uniformity | acr_spatial_resolution | acr_slice_thickness | acr_snr | acr_slice_position | acr_geometric_accuracy
<folder>
--report
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Coverage

Coverage Report
FileStmtsMissCoverMissing
hazenlib
   HazenTask.py26388%32–34
   __init__.py1514173%141, 145, 155, 160, 197, 204–209, 220, 223–230, 250–252, 270–272, 291–293, 302, 307, 313, 363, 374, 380–386, 400–401, 405
   exceptions.py21481%17–21
   relaxometry.py3179072%238–256, 631, 690–692, 746, 794–816, 834–849, 1174–1177, 1186–1189, 1201–1214, 1217–1222, 1233–1263
   shapes.py20955%13, 16, 24–29, 32
   tools.py84890%43–50, 92, 101, 117
hazenlib/tasks
   acr_geometric_accuracy.py1455562%38–72, 176–192, 206–230
   acr_ghosting.py1164264%33–53, 91–93, 123–125, 161–194
   acr_slice_position.py1545366%53–74, 152, 213–258
   acr_slice_thickness.py1536359%40–60, 186–241
   acr_snr.py1375858%34–71, 96, 165–175, 208–221, 254–267
   acr_spatial_resolution.py2427270%66–86, 165, 208, 221–230, 319–374
   acr_uniformity.py893264%34–54, 121–138
   ghosting.py1505166%18–32, 47, 109–110, 114, 124–125, 151–153, 170–172, 218–256
   relaxometry.py7271%10–11
   slice_position.py1182281%31, 40–41, 103–104, 130, 210, 217–234
   slice_width.py3595286%34–37, 107, 166–186, 451, 456–457, 463, 468, 530–531, 780–821
   snr.py1636660%62–67, 161–179, 194–203, 221–231, 258–268, 273–283, 314–327, 332–340, 369–382
   snr_map.py106199%294
   spatial_resolution.py2474482%36–39, 62, 147, 206, 332–368
   uniformity.py781976%42–45, 91–92, 99, 133–147
TOTAL289978773% 

Tests Skipped Failures Errors Time
219 0 💤 0 ❌ 0 🔥 2m 37s ⏱️

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Coverage

Coverage Report
FileStmtsMissCoverMissing
hazenlib
   HazenTask.py25388%32–34
   __init__.py1514173%141, 145, 155, 160, 197, 204–209, 220, 223–230, 250–252, 270–272, 291–293, 302, 307, 313, 363, 374, 380–386, 400–401, 405
   exceptions.py21481%17–21
   relaxometry.py3179072%238–256, 631, 690–692, 746, 794–816, 834–849, 1174–1177, 1186–1189, 1201–1214, 1217–1222, 1233–1263
   shapes.py20955%13, 16, 24–29, 32
   tools.py84890%43–50, 92, 101, 117
hazenlib/tasks
   acr_geometric_accuracy.py1455562%38–72, 176–192, 206–230
   acr_ghosting.py1164264%33–53, 91–93, 123–125, 161–194
   acr_slice_position.py1545366%53–74, 152, 213–258
   acr_slice_thickness.py1536359%40–60, 186–241
   acr_snr.py1375858%34–71, 96, 165–175, 208–221, 254–267
   acr_spatial_resolution.py2427270%66–86, 165, 208, 221–230, 319–374
   acr_uniformity.py893264%34–54, 121–138
   ghosting.py1505166%18–32, 47, 109–110, 114, 124–125, 151–153, 170–172, 218–256
   relaxometry.py7271%10–11
   slice_position.py1182281%31, 40–41, 103–104, 130, 210, 217–234
   slice_width.py3565285%34–37, 107, 166–186, 451, 456–457, 463, 468, 530–531, 780–821
   snr.py1636660%62–67, 161–179, 194–203, 221–231, 258–268, 273–283, 314–327, 332–340, 369–382
   snr_map.py106199%294
   spatial_resolution.py2464482%36–39, 62, 147, 206, 332–368
   uniformity.py781976%42–45, 91–92, 99, 133–147
TOTAL289478773% 

Tests Skipped Failures Errors Time
219 0 💤 0 ❌ 0 🔥 2m 50s ⏱️

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