Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

attempt at fixing strand for gff3 dumping #3688

Merged
merged 2 commits into from
May 8, 2023

Conversation

scottcain
Copy link
Member

I think this is all that's needed to address #3678

@scottcain scottcain requested a review from cmdcolin May 8, 2023 17:20
@github-actions github-actions bot added the needs label triage Needs a label to show in changelog (breaking, enhancement, bug, documentation, or internal) label May 8, 2023
@@ -48,7 +48,7 @@ function formatFeat(f: Feature, parentId?: string, parentRef?: string) {
f.get('start') + 1,
f.get('end'),
f.get('score') || '.',
f.get('strand') || '.',
f.get('strand') == 1 ? '+' : f.get('strand') == -1 ? '-' : '.',
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

got a weird single quote here

@cmdcolin cmdcolin merged commit 81f5410 into save_track_data May 8, 2023
@cmdcolin cmdcolin deleted the save_track_data_gff branch May 8, 2023 22:22
cmdcolin added a commit that referenced this pull request May 23, 2023
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Jun 30, 2023
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Jul 13, 2023
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Aug 22, 2023
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Sep 25, 2023
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Sep 25, 2023
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Oct 31, 2023
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Nov 3, 2023
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Nov 12, 2023
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Nov 17, 2023
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Nov 21, 2023
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Dec 1, 2023
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Dec 18, 2023
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Jan 3, 2024
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Jan 10, 2024
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Jan 19, 2024
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Feb 9, 2024
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Feb 16, 2024
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Feb 21, 2024
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Mar 12, 2024
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Mar 25, 2024
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request May 28, 2024
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
cmdcolin added a commit that referenced this pull request Jun 17, 2024
Convert to AbstractTrackModel

Fix strand for gff3 save track data (#3688)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
needs label triage Needs a label to show in changelog (breaking, enhancement, bug, documentation, or internal)
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants