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Save Track Data getting GFF3 strand wrong #3678

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scottcain opened this issue May 4, 2023 · 1 comment
Closed

Save Track Data getting GFF3 strand wrong #3678

scottcain opened this issue May 4, 2023 · 1 comment
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@scottcain
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When getting the GFF3 from the "save track data" option, the strand is given as 1 or -1, where the GFF3 standard is + or - (per https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md)

On the WormBase staging site, for example see https://staging.wormbase.org/tools/genome/jbrowse2/?session=share-4XRGcy3fL1&password=dZud4 and select "Save track data" from the track menu.

Expected behavior

Strand should be one of +, - or . (for non stranded features)

Version:

2.4.2 from the save_track_data branch

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@scottcain scottcain added the bug Something isn't working label May 4, 2023
@cmdcolin cmdcolin closed this as completed May 9, 2023
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cmdcolin commented May 9, 2023

fix by #3688

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