ESCOMP · ekluzek · Jun 21, 2022 · May 20, 2022 · May 23, 2022 · May 23, 2022
diff --git a/Externals_CLM.cfg b/Externals_CLM.cfg
@@ -2,7 +2,7 @@
 local_path = src/fates
 protocol = git
 repo_url = https://github.com/NGEET/fates
-tag = sci.1.56.0_api.23.0.0
+tag = sci.1.57.4_api.24.0.0
 required = True
 
 [externals_description]

diff --git a/bld/CLMBuildNamelist.pm b/bld/CLMBuildNamelist.pm
@@ -741,7 +741,7 @@ sub setup_cmdl_fates_mode {
 
     $var = "use_fates";
     if ( &value_is_true($nl_flags->{$var}) ) {
-      # This section is a place-holder to test for modules that are not allowed with ED
+      # This section is a place-holder to test for modules that are not allowed with FATES
       # the defaults which are set in the logic section of the namelist builder will
       # automatically set these correctly (well that is the assumption), but here we
       # want to set a catch to fail and warn users if they explicitly set incompatible user namelist
@@ -774,7 +774,7 @@ sub setup_cmdl_fates_mode {
        # dis-allow fates specific namelist items with non-fates runs
        my @list  = (  "fates_spitfire_mode", "use_fates_planthydro", "use_fates_ed_st3", "use_fates_ed_prescribed_phys",
                       "use_fates_cohort_age_tracking",
-                      "use_fates_inventory_init","use_fates_fixed_biogeog","use_fates_nocomp","use_fates_sp","fates_inventory_ctrl_filename","use_fates_logging","fates_parteh_mode" );
+                      "use_fates_inventory_init","use_fates_fixed_biogeog","use_fates_nocomp","use_fates_sp","fates_inventory_ctrl_filename","use_fates_logging","fates_parteh_mode","use_fates_tree_damage" );
        # dis-allow fates specific namelist items with non-fates runs
        foreach my $var ( @list ) {
           if ( defined($nl->get_value($var)) ) {
@@ -1167,7 +1167,7 @@ sub setup_cmdl_spinup {
      $log->fatal_error("$var has an invalid value ($val). Valid values are: @valid_values");
   }
   if ( $nl_flags->{'bgc_spinup'} eq "on" && (not &value_is_true( $nl_flags->{'use_cn'} ))  && (not &value_is_true($nl_flags->{'use_fates'})) ) {
-     $log->fatal_error("$var can not be '$nl_flags->{'bgc_spinup'}' if neither CN nor ED is turned on (use_cn=$nl_flags->{'use_cn'}, use_fates=$nl_flags->{'use_fates'}).");
+     $log->fatal_error("$var can not be '$nl_flags->{'bgc_spinup'}' if neither CN nor FATES is turned on (use_cn=$nl_flags->{'use_cn'}, use_fates=$nl_flags->{'use_fates'}).");
   }
   if ( $nl->get_value("spinup_state") eq 0 && $nl_flags->{'bgc_spinup'} eq "on" ) {
      $log->fatal_error("Namelist spinup_state contradicts the command line option bgc_spinup" );
@@ -2046,6 +2046,10 @@ sub setup_logic_subgrid {
    add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'toosmall_lake');
    add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'toosmall_wetland');
    add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'toosmall_urban');
+
+   if ( &value_is_true($nl_flags->{'use_fates'}) && $nl->get_value('n_dom_pfts') != 0 ) {
+      $log->fatal_error( "FATES and n_dom_pfts can NOT be set at the same time" );
+   }
 }
 
 #-------------------------------------------------------------------------------
@@ -2611,7 +2615,7 @@ sub setup_logic_do_transient_crops {
       # In principle, use_fates should be compatible with
       # do_transient_crops. However, this hasn't been tested, so to be safe,
       # we are not allowing this combination for now.
-      $cannot_be_true = "$var has not been tested with ED, so for now these two options cannot be combined";
+      $cannot_be_true = "$var has not been tested with FATES, so for now these two options cannot be combined";
    }
 
    if ($cannot_be_true) {
@@ -3660,6 +3664,10 @@ sub setup_logic_dry_deposition {
   my ($opts, $nl_flags, $definition, $defaults, $nl) = @_;
 
   if ($opts->{'drydep'} ) {
+    if ( &value_is_true( $nl_flags->{'use_fates'}) && not &value_is_true( $nl_flags->{'use_fates_sp'}) ) {
+       $log->warning("DryDeposition can NOT be on when FATES is also on unless FATES-SP mode is on.\n" .
+                     "   Use the '--no-drydep' option when '-bgc fates' is activated");
+    }
     add_default($opts,  $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'drydep_list');
     add_default($opts,  $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'drydep_method');
   } else {
@@ -3705,7 +3713,7 @@ sub setup_logic_megan {
 
   if ($nl_flags->{'megan'} ) {
     if ( &value_is_true( $nl_flags->{'use_fates'} ) ) {
-       $log->fatal_error("MEGAN can NOT be on when ED is also on.\n" .
+       $log->warning("MEGAN can NOT be on when FATES is also on.\n" .
                    "   Use the '-no-megan' option when '-bgc fates' is activated");
     }
     add_default($opts,  $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'megan_specifier');
@@ -4107,7 +4115,7 @@ sub setup_logic_fates {
         add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'fates_paramfile', 'phys'=>$nl_flags->{'phys'});
         my @list  = (  "fates_spitfire_mode", "use_fates_planthydro", "use_fates_ed_st3", "use_fates_ed_prescribed_phys",
                        "use_fates_inventory_init","use_fates_fixed_biogeog","use_fates_nocomp",
-                       "use_fates_logging","fates_parteh_mode", "use_fates_cohort_age_tracking" );
+                       "use_fates_logging","fates_parteh_mode", "use_fates_cohort_age_tracking","use_fates_tree_damage" );
         foreach my $var ( @list ) {
  	  add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, $var, 'use_fates'=>$nl_flags->{'use_fates'},
                       'use_fates_sp'=>$nl_flags->{'use_fates_sp'} );

diff --git a/bld/namelist_files/namelist_defaults_ctsm.xml b/bld/namelist_files/namelist_defaults_ctsm.xml
@@ -491,7 +491,7 @@ attributes from the config_cache.xml file (with keys converted to upper-case).
 <!-- FATES default parameter file                                       -->
 <!-- ================================================================== -->
 
-<fates_paramfile>lnd/clm2/paramdata/fates_params_api.22.1.0_12pft_c220307.nc</fates_paramfile>
+<fates_paramfile>lnd/clm2/paramdata/fates_params_api.24.0.0_12pft_c220608.nc</fates_paramfile>
 
 <!-- ========================================================================================  -->
 <!-- clm 5.0 BGC nitrogen model                                                                -->
@@ -2541,6 +2541,7 @@ lnd/clm2/surfdata_map/release-clm5.0.30/surfdata_ne0np4.CONUS.ne30x8_hist_78pfts
 <!-- ===== FATES DEFAULTS =========== -->
 <fates_spitfire_mode           use_fates=".true.">0</fates_spitfire_mode>
 <use_fates_planthydro          use_fates=".true.">.false.</use_fates_planthydro>
+<use_fates_tree_damage         use_fates=".true.">.false.</use_fates_tree_damage>
 <use_fates_cohort_age_tracking use_fates=".true.">.false.</use_fates_cohort_age_tracking>
 <use_fates_ed_st3              use_fates=".true.">.false.</use_fates_ed_st3>
 <use_fates_ed_prescribed_phys  use_fates=".true.">.false.</use_fates_ed_prescribed_phys>

diff --git a/bld/namelist_files/namelist_definition_ctsm.xml b/bld/namelist_files/namelist_definition_ctsm.xml
@@ -648,6 +648,12 @@ Switch deciding which nutrient model to use in FATES.
 (Only relevant if FATES is on)
 </entry>
 
+<entry id="use_fates_tree_damage" type="logical" category="physics"
+        group="clm_inparm" valid_values="" value=".false."> 
+Toggle to turn on the tree damage module in FATES
+(Only relevant if FATES is on)
+</entry>
+
 <entry id="fates_spitfire_mode" type="integer" category="physics"
         group="clm_inparm" valid_values="0,1,2,3,4,5" value=".false.">
 Turn on spitfire module to simulate fire by setting fates_spitfire_mode > 0.
@@ -2124,7 +2130,7 @@ Command line arguement for biogeochemistry mode for CLM4.5
         Nitrification/De-nitrification
         Methane model
         Vertically resolved Carbon
-   fates = FATES/ED ecosystem demography model with below ground BGC:
+   fates = FATES Functionally Assembled Terrestrial Ecosystem Simulator (ecosystem demography model with below ground BGC):
 </entry>
 
 <!-- ========================================================================================  -->

diff --git a/bld/unit_testers/build-namelist_test.pl b/bld/unit_testers/build-namelist_test.pl
@@ -163,7 +163,7 @@ sub cat_and_create_namelistinfile {
 #
 # Figure out number of tests that will run
 #
-my $ntests = 1844;
+my $ntests = 1846;
 if ( defined($opts{'compare'}) ) {
    $ntests += 1254;
 }
@@ -956,6 +956,11 @@ sub cat_and_create_namelistinfile {
                                      GLC_TWO_WAY_COUPLING=>"FALSE",
                                      phys=>"clm5_0",
                                    },
+     "useFATESWn_dom_pft"        =>{ options=>"-bgc fates -envxml_dir . -no-megan",
+                                     namelst=>"n_dom_pfts = 1",
+                                     GLC_TWO_WAY_COUPLING=>"FALSE",
+                                     phys=>"clm5_0",
+                                   },
      "useFATESWbMH"              =>{ options=>"-bgc fates -envxml_dir . -no-megan",
                                      namelst=>"use_biomass_heat_storage=.true.",
                                      GLC_TWO_WAY_COUPLING=>"FALSE",
@@ -1001,6 +1006,11 @@ sub cat_and_create_namelistinfile {
                                      GLC_TWO_WAY_COUPLING=>"FALSE",
                                      phys=>"clm4_5",
                                    },
+     "useDRYDEPwithFATES"        =>{ options=>"--bgc fates --envxml_dir . --no-megan --drydep",
+                                     namelst=>"",
+                                     GLC_TWO_WAY_COUPLING=>"FALSE",
+                                     phys=>"clm4_5",
+                                   },
      "useFATESSPWONOCOMP"        =>{ options=>"-bgc fates -envxml_dir . -no-megan",
                                      namelst=>"use_fates_sp=T,use_fates_nocomp=F",
                                      GLC_TWO_WAY_COUPLING=>"FALSE",

diff --git a/cime_config/testdefs/testlist_clm.xml b/cime_config/testdefs/testlist_clm.xml
@@ -1804,6 +1804,24 @@
       <option name="wallclock">00:20:00</option>
     </options>
   </test>
+  <test name="SMS_D" grid="f45_f45_mg37" compset="I2000Clm50FatesRs" testmods="clm/FatesColdDefDryDep">
+    <machines>
+      <machine name="cheyenne" compiler="gnu" category="aux_clm"/>
+    </machines>
+    <options>
+      <option name="wallclock">00:20:00</option>
+      <option name="comment"  >Run a test with dry deposition on and regular FATES</option>
+    </options>
+  </test>
+  <test name="ERS_D_Ld15" grid="f45_f45_mg37" compset="I2000Clm50FatesRs" testmods="clm/FatesColdDefTreeDamage">
+    <machines>
+      <machine name="cheyenne" compiler="intel" category="fates"/>
+    </machines>
+    <options>
+      <option name="wallclock">00:20:00</option>
+      <option name="comment"  >Ensure functionality of the tree damage option in FATES</option>
+    </options>
+  </test>
   <test name="ERS_D_Ld3_PS" grid="f09_g17" compset="I2000Clm50FatesRs" testmods="clm/FatesColdDef">
     <machines>
       <machine name="cheyenne" compiler="intel" category="aux_clm"/>
@@ -2060,7 +2078,7 @@
       <option name="comment">Short ERP debug FATES test for f19_g17 grid.</option>
     </options>
   </test>
-  <test name="ERP_D_P32x2_Ld3" grid="f19_g17" compset="I2000Clm50FatesCru" testmods="clm/FatesColdDef">
+  <test name="ERP_D_P36x2_Ld3" grid="f19_g17" compset="I2000Clm50FatesCru" testmods="clm/FatesColdDef">
     <machines>
       <machine name="cheyenne" compiler="intel" category="fates"/>
     </machines>
@@ -2251,6 +2269,24 @@
       <option name="comment">Test with DEBUG on for FatesSP mode, NOTE: FatesSp has the largest difference in CTSM code for any FATES mode</option>
     </options>
   </test>
+  <test name="SMS_D" grid="1x1_brazil" compset="I2000Clm51FatesSpCruRsGs" testmods="clm/FatesColdDefDryDepReducedComplexSatPhen">
+    <machines>
+      <machine name="cheyenne" compiler="gnu" category="aux_clm"/>
+    </machines>
+    <options>
+      <option name="wallclock">00:20:00</option>
+      <option name="comment"  >Run a test with dry deposition on and FATES-SP</option>
+    </options>
+  </test>
+  <test name="SMS_D" grid="1x1_brazil" compset="I2000Clm51FatesSpCruRsGs" testmods="clm/FatesColdDefMeganReducedComplexSatPhen">
+    <machines>
+      <machine name="cheyenne" compiler="gnu" category="aux_clm"/>
+    </machines>
+    <options>
+      <option name="wallclock">00:20:00</option>
+      <option name="comment"  >Run a test with MEGAN on and FATES-SP</option>
+    </options>
+  </test>
 <!--    Don't active this test until #1722 is fixed
   <test name="SMS_Ld3" grid="f09_f09_mg17" compset="I2000Clm51FatesCruRsGs" testmods="clm/FatesColdDefReducedComplexSatPhen_prescribed">
     <machines>

diff --git a/cime_config/testdefs/testmods_dirs/clm/FatesColdDefDryDep/include_user_mods b/cime_config/testdefs/testmods_dirs/clm/FatesColdDefDryDep/include_user_mods
@@ -0,0 +1 @@
+../FatesColdDef
diff --git a/cime_config/testdefs/testmods_dirs/clm/FatesColdDefDryDep/shell_commands b/cime_config/testdefs/testmods_dirs/clm/FatesColdDefDryDep/shell_commands
@@ -0,0 +1,3 @@
+./xmlchange CLM_BLDNML_OPTS='--drydep' --append
+# The following would be required if you want to run with DryDep and FATES without Fates-SP mode
+#./xmlchange CLM_BLDNML_OPTS="--ignore_warnings" --append
diff --git a/...nfig/testdefs/testmods_dirs/clm/FatesColdDefDryDepReducedComplexSatPhen/include_user_mods b/...nfig/testdefs/testmods_dirs/clm/FatesColdDefDryDepReducedComplexSatPhen/include_user_mods
@@ -0,0 +1,2 @@
+../FatesColdDefDryDep
+../FatesColdDefReducedComplexSatPhen
diff --git a/cime_config/testdefs/testmods_dirs/clm/FatesColdDefMegan/include_user_mods b/cime_config/testdefs/testmods_dirs/clm/FatesColdDefMegan/include_user_mods
@@ -0,0 +1 @@
+../FatesColdDef
diff --git a/cime_config/testdefs/testmods_dirs/clm/FatesColdDefMegan/shell_commands b/cime_config/testdefs/testmods_dirs/clm/FatesColdDefMegan/shell_commands
@@ -0,0 +1,2 @@
+./xmlchange CLM_BLDNML_OPTS='--megan' --append
+./xmlchange CLM_BLDNML_OPTS="--ignore_warnings" --append
diff --git a/...onfig/testdefs/testmods_dirs/clm/FatesColdDefMeganReducedComplexSatPhen/include_user_mods b/...onfig/testdefs/testmods_dirs/clm/FatesColdDefMeganReducedComplexSatPhen/include_user_mods
@@ -0,0 +1,2 @@
+../FatesColdDefMegan
+../FatesColdDefReducedComplexSatPhen
diff --git a/cime_config/testdefs/testmods_dirs/clm/FatesColdDefTreeDamage/include_user_mods b/cime_config/testdefs/testmods_dirs/clm/FatesColdDefTreeDamage/include_user_mods
@@ -0,0 +1 @@
+../FatesColdDef
diff --git a/cime_config/testdefs/testmods_dirs/clm/FatesColdDefTreeDamage/user_nl_clm b/cime_config/testdefs/testmods_dirs/clm/FatesColdDefTreeDamage/user_nl_clm
@@ -0,0 +1 @@
+use_fates_tree_damage=.true.
diff --git a/doc/ChangeLog b/doc/ChangeLog
@@ -1,4 +1,91 @@
 ===============================================================
+Tag name: ctsm5.1.dev099
+Originator(s): rgknox (Ryan Knox)
+Date: Tue Jun 21 03:20:42 PM EDT 2022
+One-line Summary: Enabling FATES control over the number of patches on the natural land unit
+
+Purpose and description of changes
+----------------------------------
+
+This set of changes 1) allows FATES to dictate the number of patches on the naturaly vegetated land unit and 2) is compatible with a version of FATES that updates the parameter file format (changes in parameter naming and parameter set).  Efforts were made to adhere to the system of how patches are looped and loop bounds are defined. There is interaction with the reading of the surface file, which previously dictated all patch counts based on the number of PFTs in the file.  FATES-SP and biogeography preserves the ability to use surface file weighting factors associated with PFTs and CFTs to drive area fractions in FATES.  This change is motivated by FATES-side updates to the parameter file, which includes new settings where the user can control the number of primary "fates_maxpatch_primary" and secondary "fates_maxpatch_secondary" patches. Users should also be aware of a new namelist setting "use_fates_tree_damage" which defaults to false (inoperative).
+
+
+Significant changes to scientifically-supported configurations
+--------------------------------------------------------------
+
+Does this tag change answers significantly for any of the following physics configurations?
+
+None
+
+
+[ ] clm5_1
+
+[ ] clm5_0
+
+[ ] ctsm5_0-nwp
+
+[ ] clm4_5
+
+
+Bugs fixed or introduced
+------------------------
+
+CTSM Issues Fixed:
+Fixes #1764 "fates test fails to run on dev095"
+Fixes #1762 "Change threaded fates test from P32x2 to P36x2"
+Fixes #1784 "Get dry-deposition working with FATES-SP mode"
+
+Known bugs introduced in this tag (include issue #): None
+
+Known bugs found since the previous tag (include issue #): None
+
+
+Notes of particular relevance for users
+---------------------------------------
+
+Relevant issue #1785 "Refactor surfrd for FATES"
+Relevant issue #1780 "Some collapse options should be disabled with FATES"
+
+In the process of this PR, we learned that FATES is fundamentally incompatible with the dry-deposition code. FATES-SP may be compatibile, but still needs investigation.
+
+Changes to CTSM's user interface (e.g., new/renamed XML or namelist variables): There is a new namelist setting for FATES simulations that turns on the crown damage module: "use_fates_tree_damage". Settings for this module can be found in the FATES parameter file.  This namelist variable is a binary true/false, and it defaults to false.
+
+Changes to the datasets (e.g., parameter, surface or initial files): Users should also be aware that FATES has a new parameter file format and API. The default file on the ucar dataserver has been updated.
+
+Substantial timing or memory changes: none that we're aware of, but with more refined control of patch counts and allocation should come improvements in memory usage.
+
+
+Notes of particular relevance for developers:
+---------------------------------------------
+
+Caveats for developers (e.g., code that is duplicated that requires double maintenance): None.  Some new code was added to surfrdMod.F90, but this is not redundant. Efforts may be made in the future to have more unification there when we have FATES compatable with crops on the crop land-unit.
+
+Changes to tests or testing:  Tests were added to cover the new crown damage module, and combinations of dry-deposition and megan with FATES-SP.  The build system is also aware that these features will not and should not be used with FATES in a non-SP framework.
+
+
+Testing summary:
+----------------
+
+  regular tests (aux_clm: https://github.com/ESCOMP/CTSM/wiki/System-Testing-Guide#pre-merge-system-testing):
+
+    cheyenne ---- OK
+    izumi ------- OK
+
+  fates tests :
+    cheyenne ---- OK
+    izumi ------- OK
+
+If the tag used for baseline comparisons was NOT the previous tag, note that here: dev098 was updated to point to the moost recent FATES tag: sci.1.57.4_api.23.0.0.
+
+
+Answer changes
+--------------
+
+Changes answers relative to baseline:  NLCOMP changes (differences in namelist fields) were the only differences and they were expected.  All other tests generated B4B results.
+
+
+===============================================================
+===============================================================
 Tag name: ctsm5.1.dev098
 Originator(s): swensosc (Sean Swenson)
 Date: Fri May 20 18:15:53 MDT 2022

diff --git a/doc/ChangeSum b/doc/ChangeSum
@@ -1,5 +1,6 @@
 Tag                   Who      Date  Summary
 ============================================================================================================================
+    ctsm5.1.dev099   rgknox 06/21/2022 Enabling FATES control over the number of patches on the natural land unit
     ctsm5.1.dev098 swensosc 05/20/2022 Correct perched water table calculation
     ctsm5.1.dev097    sacks 05/20/2022 Update ccs_config to fix issue on izumi and maybe elsewhere
     ctsm5.1.dev096     erik 05/18/2022 Fix a few glitches from the last tag

diff --git a/src/biogeochem/DryDepVelocity.F90 b/src/biogeochem/DryDepVelocity.F90
@@ -103,9 +103,14 @@ Module DryDepVelocity
   !------------------------------------------------------------------------
   subroutine Init(this, bounds)
 
+    use clm_varctl     , only : use_fates, use_fates_sp
     class(drydepvel_type) :: this
     type(bounds_type), intent(in) :: bounds  
 
+    if ( (.not. use_fates_sp) .and. use_fates .and. (n_drydep > 0 .and. drydep_method == DD_XLND) )then
+       call endrun( msg='ERROR: Dry-deposition currently does NOT work with FATES outside of FATES-SP mode (see github issue #1044)'//&
+                    errMsg(sourcefile, __LINE__))
+    end if
     call this%InitAllocate(bounds)
     call this%InitHistory(bounds)
 

diff --git a/src/biogeochem/EDBGCDynMod.F90 b/src/biogeochem/EDBGCDynMod.F90
@@ -260,6 +260,25 @@ subroutine EDBGCDyn(bounds,                                                    &
        call t_stopf('SoilBiogeochemLittVertTransp')
     end if
 
+    ! Wood product fluxes will eventually be added to FATES-CLM. However
+    ! it is likely this will be implemented during or after we break away from
+    ! using this module. This module and the current coupling stategy bypasses
+    ! a number of processes in CLM, which includes the wood product modules.
+    ! Therefore the following call is a placeholder so that the wood-product 
+    ! wrapper code can be copied from here and applied at the right place when the time comes.
+    ! RGK 06-2022
+
+    !call FatesWrapWoodProducts(bounds, num_soilc, filter_soilc,c_products_inst)
+    !call t_startf('CNWoodProducts')
+    !call c_products_inst%UpdateProducts(bounds, &
+    !     num_soilp, filter_soilp, &
+    !     dwt_wood_product_gain_patch = cnveg_carbonflux_inst%dwt_wood_productc_gain_patch(begp:endp), &
+    !     wood_harvest_patch = cnveg_carbonflux_inst%wood_harvestc_patch(begp:endp), &
+    !     dwt_crop_product_gain_patch = cnveg_carbonflux_inst%dwt_crop_productc_gain_patch(begp:endp), &
+    !     crop_harvest_to_cropprod_patch = cnveg_carbonflux_inst%crop_harvestc_to_cropprodc_patch(begp:endp))
+    !call t_stopf('CNWoodProducts')
+
+
     end associate
 
   end subroutine EDBGCDyn
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		../FatesColdDefDryDep
		../FatesColdDefReducedComplexSatPhen
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		./xmlchange CLM_BLDNML_OPTS='--megan' --append
		./xmlchange CLM_BLDNML_OPTS="--ignore_warnings" --append
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		../FatesColdDefMegan
		../FatesColdDefReducedComplexSatPhen