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Example 1.7 typo #103

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ekluzek opened this issue Dec 16, 2017 · 2 comments
Open

Example 1.7 typo #103

ekluzek opened this issue Dec 16, 2017 · 2 comments
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bfb bit-for-bit documentation additions or edits to user-facing documentation good first issue simple; good for first-time contributors test: none No tests required (e.g. tools/contrib)

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@ekluzek
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ekluzek commented Dec 16, 2017

Tim Hoar < thoar > - 2014-09-19 11:27:16 -0600
Bugzilla Id: 2047
Bugzilla CC: rfisher, sacks,

Example 1.7 in the CLM 1_1 users guide has a typo. (page 66)
http://www.cesm.ucar.edu/models/cesm1.1/clm/models/lnd/clm/doc/UsersGuide/clm_ug.pdf

The commentary indicates you set hist_type1d_pertape but the example has hist_type2d_pertape (which doesn't exist).

Chapter 1. How to customize the configuration for a case with CLM
Sometimes it’s important to understand how different land-units or vegetation types are acting within a
grid-cell. The way to do this is to output history files as a 1D-vector of all land-units and vegetation
types. In order to display this, you’ll need to do extensive post-processing to make sense of the output.
Often you may only be interested in a few points, so once you figure out the 1D indices for the grid-cells
of interest, you can easily view that data. 1D vector output can also be useful for single point datasets,
since it’s then obvious that all data is for the same grid cell.
To do this you use hist_dov2xy which is an array of rank six for each history stream. Set it to
.false. if you want one of the history streams to be a 1D vector. You can also use
hist_type1d_pertape if you want to average over all the: Plant-Function-Types, columns, land-units,
or grid-cells. A sample user namelist user_nl_clm leaving the primary monthly files as 2D, and then
doing grid-cell (GRID), column (COLS), and no averaging over auxiliary tapes output daily for a single
field (ground temperature) is:
Example 1-7. Example user_nl_clm namelist outputting some files in 1D Vector format
hist_fincl2 = ’TG’
hist_fincl3 = ’TG’
hist_fincl4 = ’TG’
hist_fincl5 = ’TG’
hist_fincl6 = ’TG’
hist_dov2xy = .true., .false., .false., .false.
hist_type2d_pertape = ’ ’, ’GRID’, ’COLS’, ’ ’
hist_nhtfrq = 0, -24, -24, -24

@ekluzek ekluzek added this to the clm5 milestone Dec 16, 2017
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ekluzek commented Dec 16, 2017

Bill Sacks < sacks > - 2016-08-22 14:27:18 -0600

Won't fix old user's guide, but want to make sure this is addressed in the new (CLM5) user's guide, if it isn't already.

billsacks added a commit to billsacks/ctsm that referenced this issue May 8, 2018
04273058 Merge pull request ESCOMP#103 from billsacks/no_logging
9bb46aa5 Make no-logging be the default
9af6b021 Merge pull request ESCOMP#102 from billsacks/explain_qmark
7f973ae3 Run through make style
d077a57d Add message describing meaning of '?'
60fc03b7 Merge pull request ESCOMP#101 from ESMCI/catch_svn_error
28073ec4 add exception class
4fb7e47f catch errors from svn status --xml
bfa48312 Merge pull request ESCOMP#98 from billsacks/quieter
7d12650b make style
afb4f115 Make more git and svn commands quieter

git-subtree-dir: manage_externals
git-subtree-split: 04273058c297127927f0fc85eed1cdc33e1a3af3
@ekluzek ekluzek removed this from the clm5 milestone Aug 11, 2019
@ekluzek ekluzek added the documentation additions or edits to user-facing documentation label Aug 11, 2019
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ekluzek commented Aug 11, 2019

Looks like this still needs to be changes in custom.xml.

slevis-lmwg pushed a commit to slevis-lmwg/ctsm that referenced this issue Dec 22, 2022
fde04e4 Merge pull request ESCOMP#138 from billsacks/add_python38_tests
37e4c4a Do not update dictionary in-place in loop
7e8474b Remove testing on mac os
7f41c56 Fix pylint issue
3065b0d Add travis-ci tests with python3.7 and python3.8
34fbf55 Add support for git sparse checkout
6c6ef9f Fix pylint errors
6a659ad Added test for sparse checkout and updated documentation
1443243 Support for git sparsecheckout via read-tree.
a48558d Merge pull request ESCOMP#119 from gold2718/submodules
f72ffe7 Do not try git submodule update if no .gitmodules file (git bug)
804e0af Fix a pylint error
45aef95 Addressed review concerns
7da5031 New capability to use git submodule information to checkout externals
1926530 Merge pull request ESCOMP#118 from mnlevy1981/svn_switch
b1b028d Updates after testing
9ea73e6 Add --svn-ignore-ancestry argument
fc5acda Merge pull request ESCOMP#114 from billsacks/fix_large_output_hang
aa2eb71 Try getting travis-ci working on MacOS
96842b4 Fix pylint errors
813fe3c pylint: disable useless-object-inheritance
c49d878 Rework execute_subprocess timeout handling
8fc0e5f Cleanup from 'make style'
b0b23a6 Merge pull request ESCOMP#110 from gold2718/help_fix
3cbcd16 Fixed and clarified help documentation
025e6cb Merge pull request ESCOMP#107 from jedwards4b/ignore_empty_git_dir
489842b if you encounter an empty directory clone into it
0c5a2f6 Merge pull request ESCOMP#106 from billsacks/remove_logfile_message
7799e99 Remove message about checking the log file for more details
0427305 Merge pull request ESCOMP#103 from billsacks/no_logging
9bb46aa Make no-logging be the default
9af6b02 Merge pull request ESCOMP#102 from billsacks/explain_qmark
7f973ae Run through make style
d077a57 Add message describing meaning of '?'
60fc03b Merge pull request ESCOMP#101 from ESMCI/catch_svn_error
28073ec add exception class
4fb7e47 catch errors from svn status --xml
bfa4831 Merge pull request ESCOMP#98 from billsacks/quieter
7d12650 make style
afb4f11 Make more git and svn commands quieter
a465b4f add --quiet argument to improve performance
b2f3ae8 Merge pull request ESCOMP#83 from jedwards4b/jedwards/components_arg
3f4c88f fix comment
c1b5b09 remove unneeded logic
4fdf180 one more test
f78d60f another test
bf52ac6 add a test
91d4851 fix pylint issue
987df5a only use components if populated
98a810d add a components arg to checkout only select components
6923119 Merge pull request ESCOMP#90 from ESMCI/issue-86-detached-sync-status
b11ad61 Merge branch 'master' into issue-86-detached-sync-status
3b624cf Merge pull request ESCOMP#93 from billsacks/work_on_coverage
2562830 Run a single coverage command rather than two separate commands
d1de5f8 Return to starting directory after each test
144f7d9 Merge pull request ESCOMP#92 from billsacks/point_to_esmci
58b8d3e Point to location of repository
0b46d81 Point to correct location for build/coverage status
a385070 fix pylint problems
dcf17b6 make style cleanup
92d342c Rewrite _current_ref to use plumbing rather than parsing porcelain
ca0a5d3 Rework some git repository functions, and major rework of unit tests
719383e Remove commented-out pdb.set_trace() call
376c780 Bugfix: detect and report 'detached from' correctly
21813e9 Add system test demonstrating failure to detect out of sync status.
1a7c59d Merge documentation update into master.
f1e9e99 Merge schema support for git hashes into master.
247fee1 Document return values of checkout.py: main
195c1d0 Implement explicit use of a hash for git repositories.
12dd743 Refactor: schema validation output
fdbc720 Bugfix: incorrect order of operations validing user input
d6423c6 Bugfix: timeout limit for subprocesses
7998f60 Update readme and help output
00b6fb2 Bugfix: add explicit schema version checking
0527869 Update readme
1ae8c84 Merge bugfix branch for stale subexternals into master.
b0c16d7 Bugfix: stale sub-externals after checkout.
30a4e44 Finish implementing system test for mixed-use externals
ac7ff96 Update mixed-use test repo.
bfda7b9 Bugfix: regexp for determining git tracking branches

git-subtree-dir: manage_externals
git-subtree-split: fde04e4d9a758b3aa277aa5fa44a59f5153f2958
samsrabin pushed a commit to samsrabin/CTSM that referenced this issue Apr 19, 2024
### Description of changes

Add support for downloading and checking the NEON data inventory file listing.csv
Generated new baselines due to FIELDLIST field lists differ  jul12
### Specific notes

Contributors other than yourself, if any:

CMEPS Issues Fixed (include github issue #):

Are there dependencies on other component PRs
 - [X] CIME (list)  hash 5f05541 on the trunk
 - [ ] CMEPS (list)

Are changes expected to change answers?
 - [X] bit for bit
 - [ ] different at roundoff level
 - [ ] more substantial

Any User Interface Changes (namelist or namelist defaults changes)?
 - [ ] Yes
 - [X] No

Testing performed:
- [X] (required) aux_cdeps
   - machines and compilers:
   - details (e.g. failed tests):
- [ ] (optional) CESM prealpha test
   - machines and compilers
   - details (e.g. failed tests):

Hashes used for testing:
- [X] CIME
  - repository to check out: https://github.com/ESCOMP/CESM.git
  - branch:
  - hash:5f05541 
- [X] CMEPS
  - repository to check out: https://github.com/ESCOMP/CESM.git
  - branch:
  - hash: cmeps0.13.15
- [ ] CESM
  - repository to check out: https://github.com/ESCOMP/CESM.git
  - branch:
  - hash:
@samsrabin samsrabin added this to the ctsm6.0.0 (code freeze) milestone Sep 5, 2024
@samsrabin samsrabin added simple bfb bit-for-bit test: none No tests required (e.g. tools/contrib) labels Sep 5, 2024
@samsrabin samsrabin added good first issue simple; good for first-time contributors and removed simple labels Oct 3, 2024
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