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V1.2.3 Update #85

Merged
merged 2 commits into from
Sep 25, 2024
Merged

V1.2.3 Update #85

merged 2 commits into from
Sep 25, 2024

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dthoward96
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V1.2.3 Release of SeqSender

Changes:

BioSample/SRA:

  • Fixes bug where if submitting only one sample to BioSample/SRA, file "submission_status_report.csv" is not correctly updated with accession for sample because "report.xml" is not processed correctly.
  • Added error handling for when "submission_status_report.csv" has no accessions to be updated but submission status is marked as "Processed".

dthoward96 and others added 2 commits September 25, 2024 18:27
* Create DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update and rename DH_upload.yml to DH_GHCR_upload.yml

* Update DH_GHCR_upload.yml

* Delete .github/workflows/GHCR_docker.yml

* Update DH_GHCR_upload.yml
@dthoward96 dthoward96 merged commit 90b59ff into master Sep 25, 2024
2 checks passed
@dthoward96 dthoward96 deleted the dev branch September 25, 2024 22:47
dthoward96 added a commit that referenced this pull request Sep 25, 2024
* Update issue templates

* v1.2.2 FLU GISAID update

* V1.2.2 Version num Update

* GitHub action test (#83)

* Create DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update and rename DH_upload.yml to DH_GHCR_upload.yml

* Update DH_GHCR_upload.yml

* Delete .github/workflows/GHCR_docker.yml

* Update DH_GHCR_upload.yml

* V1.2.3 Update (#85)

* GitHub action test (#83) (#84)

* Create DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update DH_upload.yml

* Update and rename DH_upload.yml to DH_GHCR_upload.yml

* Update DH_GHCR_upload.yml

* Delete .github/workflows/GHCR_docker.yml

* Update DH_GHCR_upload.yml

* Update BioSample/SRA handler to fix bug for one sample

* Dev (#86)

* Version num update

* Version num update
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