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46 Open 84 Closed
46 Open 84 Closed
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Issues list

Check the repo template and make we are up to date
#343 opened Feb 7, 2025 by arik-shurygin
ci and pre-commit cleanup (as a PR)
#342 opened Feb 7, 2025 by arik-shurygin
add a changelog (as a PR)
#341 opened Feb 7, 2025 by arik-shurygin
Capture current code patterns and opportunities for enhancement to DynODE
#337 opened Feb 7, 2025 by cdc-ap66
@tjhladish @kokbent
Auto tagging in cicd for DynODE
#336 opened Feb 7, 2025 by cdc-ap66
Create "development" branch in DynODE and make a single commit
#334 opened Feb 6, 2025 by cdc-ap66
5 tasks done
@arik-shurygin
3
using arviz to standardize model output
#330 opened Jan 21, 2025 by arik-shurygin
Improve memory performance of ODE solvers via diffrax.diffrax.SubSaveAt
#326 opened Jan 16, 2025 by arik-shurygin
Config checker to validate all parameters in the JSONs
#322 opened Jan 10, 2025 by kokbent
1
beta_coef(self, t) returns incorrect values
#321 opened Jan 10, 2025 by arik-shurygin
Generalize covid initializer process to different INIT_DATE parameters.
#320 opened Jan 10, 2025 by arik-shurygin
strain introduction lists mirror strain enum. enterprise_practices Governance housekeeping trying to keep projects usable and secure.
#319 opened Jan 10, 2025 by arik-shurygin
1
remove side effects from methods enterprise_practices Governance housekeeping trying to keep projects usable and secure.
#318 opened Jan 10, 2025 by arik-shurygin
parrallelize posterior particle loading
#315 opened Jan 7, 2025 by arik-shurygin
changelog and version incrementing enterprise_practices Governance housekeeping trying to keep projects usable and secure.
#314 opened Jan 7, 2025 by arik-shurygin
type hinting on all parts of DynODE enterprise_practices Governance housekeeping trying to keep projects usable and secure.
#312 opened Jan 7, 2025 by arik-shurygin
Data dictionary for each possible parameter to the model enhancement New feature or request
#291 opened Oct 28, 2024 by arik-shurygin
6
ensure reproducibility and simplify the process of loading old jobs enhancement New feature or request enterprise_practices Governance housekeeping trying to keep projects usable and secure.
#287 opened Oct 24, 2024 by arik-shurygin
Test using cached or pre-heated metric for NUTS sampling to decrease inference time experiment some sort of experiment to better understand a part of the model
#285 opened Oct 22, 2024 by SamuelBrand1
3
Sensitivity analysis for the introduction mechanism experiment some sort of experiment to better understand a part of the model
#283 opened Oct 22, 2024 by SamuelBrand1
Folding IHR into config? enhancement New feature or request
#273 opened Oct 11, 2024 by kokbent
3
create shiny vis portal for immunity visualization of the populations enhancement New feature or request
#269 opened Oct 8, 2024 by arik-shurygin
Calculate pointwise log-likelihoods and LOO elpd at the end of fitting enhancement New feature or request
#266 opened Oct 5, 2024 by kokbent
@kokbent
1
Test SVI for a model where we have NUTS results enhancement New feature or request experiment some sort of experiment to better understand a part of the model
#258 opened Oct 1, 2024 by SamuelBrand1
Ideas to simplify the generative model for variant data enhancement New feature or request experiment some sort of experiment to better understand a part of the model
#252 opened Sep 24, 2024 by SamuelBrand1
7
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