Update use cases wrt components API. #136
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This was referenced Mar 15, 2024
`isoutofdomain` only checked for species biomasses and not nutrients.
- `BodyMass`:
- `Z=10` (Brose2006)
- This blueprint is not embedded anymore by `ClassicResponse` by default,
because `BodyMass` is typically already in the system
when the `ClassicResponse` is added,
as it is useful to calculate other parameters.
- `simulate`:
- `tmax` argument becomes mandatory and positional.
- Don't use `TerminateSteadyState` by default.
- `extinction_threshold` is lowered to 1e-12:
if species should go extinct they will.
- `verbose = false`, phew.
- `Nutrients`:
- Nutrients.Nodes(:one_per_producer).
- New default values from Brose2008.
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Helpful part of #131 <3