Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Supp reconstructions #69

Merged
merged 11 commits into from
Dec 3, 2024
Merged

Supp reconstructions #69

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
11 commits
Select commit Hold shift + click to select a range
0f16eab
add supplemental reconstruction generation code for SDFs
Dec 2, 2024
5af4ad7
run pre-commit
Dec 2, 2024
8f7ac1d
bugfixes to punctate plotting
Dec 2, 2024
c2ff00f
Merge branch 'main' of https://github.com/AllenCell/benchmarking_repr…
Dec 2, 2024
d7472a3
fix bugs with color norm for PC recons
Dec 3, 2024
668501d
remove print
Dec 3, 2024
691bccc
Merge branch 'main' of https://github.com/AllenCell/benchmarking_repr…
Dec 3, 2024
84ea6ac
add run docs
Dec 3, 2024
a8c0969
add cellpack reconstruction code + pre-commit
Dec 3, 2024
ba411bb
Added a block to check for canonical reconstructions
Dec 3, 2024
5ef922e
Added a small change to account for datasets without canonical recons…
Dec 3, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 4 additions & 2 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,11 +1,12 @@
# Benchmarking Representations

Code for training and benchmarking morphology appropriate representation learning methods, associated with the following manuscript.

> **Interpretable representation learning for 3D multi-piece intracellular structures using point clouds**
>
>
> Ritvik Vasan, Alexandra J. Ferrante, Antoine Borensztejn, Christopher L. Frick, Nathalie Gaudreault, Saurabh S. Mogre, Benjamin Morris, Guilherme G. Pires, Susanne M. Rafelski, Julie A. Theriot, Matheus P. Viana
>
> bioRxiv 2024.07.25.605164; doi: https://doi.org/10.1101/2024.07.25.605164
> bioRxiv 2024.07.25.605164; doi: https://doi.org/10.1101/2024.07.25.605164

Our analysis is organized as follows.

Expand All @@ -31,4 +32,5 @@ If you'd like to reproduce this analysis on our data, check out the following do
Coming soon

# Contact

Allen Institute for Cell Science ([email protected])
Loading
Loading