Supp reconstructions #69
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fatwir
approved these changes
Dec 3, 2024
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This PR adds supplemental reconstruction figure creation code:
python src/br/analysis/save_reconstructions.py --save_path "./outputs_npm1/reconstructions/" --dataset_name "npm1" --test_ids 964798 661110 644401 967887 703621 --generate_reconstructions True --sdf Trueand
python src/br/analysis/save_reconstructions.py --save_path "./outputs_other_polymorphic/reconstructions/" --dataset_name "other_polymorphic" --test_ids 691110 723687 816468 800894 --generate_reconstructions True --sdf Truethis produces the following figure for the NPM1 dataset
python src/br/analysis/save_reconstructions.py --save_path "./outputs_pcna/reconstructions/" --dataset_name "pcna" --generate_reconstructions True --sdf False --normalize_across_recons Truepython src/br/analysis/save_reconstructions.py --save_path "./outputs_other_punctate/reconstructions/" --dataset_name "other_punctate" --generate_reconstructions True --normalize_across_recons False --sdf Falsepython src/br/analysis/save_reconstructions.py --save_path "./outputs_cellpack/reconstructions/" --dataset_name "cellpack" --generate_reconstructions True --sdf FalseThis produces many panels like the following
Addresses #2 - for figs S3, S4, S6, S7, S9, S10