Merge pull request #151 from AgroCares/development

Release/v2.0.0

.Rbuildignore

@@ -4,4 +4,6 @@
 ^docs$
 ^Meta$
 ^dev$
-^DEV$
+^DEV$
+^\.github$
+^codecov\.yml$

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,46 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macOS-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-pandoc@v1
+
+      - uses: r-lib/actions/setup-r@v1
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v1
+        with:
+          extra-packages: rcmdcheck
+
+      - uses: r-lib/actions/check-r-package@v1

.github/workflows/pkgdown.yaml

@@ -0,0 +1,35 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-pandoc@v1
+
+      - uses: r-lib/actions/setup-r@v1
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v1
+        with:
+          extra-packages: pkgdown
+          needs: website
+
+      - name: Deploy package
+        run: |
+          git config --local user.name "$GITHUB_ACTOR"
+          git config --local user.email "[email protected]"
+          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'

.github/workflows/test-coverage.yaml

@@ -0,0 +1,30 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master, development]
+  pull_request:
+    branches: [main, master, development]
+
+name: test-coverage
+
+jobs:
+  test-coverage:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@v1
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v1
+        with:
+          extra-packages: covr
+
+      - name: Test coverage
+        run: covr::codecov()
+        shell: Rscript {0}

.gitignore

@@ -8,4 +8,4 @@ Meta
 dev/*.tif
 dev/*.gpkg
 dev/*brp19.Rdata
-dev/brp*.rds
+dev/brp*.rds

DESCRIPTION

@@ -1,17 +1,18 @@
 Package: OBIC
 Type: Package
-Title: Functions for the Open Bodem Index (OBI)
-Version: 1.0.4
+Title: Calculate the Open Bodem Index (OBI) score
+Version: 2.0.0
 Authors@R: c(
     person("Sven", "Verweij", email = "[email protected]", role = c("aut","cre")),
     person("Gerard", "Ros", email = "[email protected]", role = "aut"),
     person("Job", "de Pater", email = "[email protected]", role = "ctb"),
     person("Yuki", "Fujita", email = "[email protected]", role = "ctb"),
-    person("Nutriënten Managment Instituut", email = "nmi@nmi-agro.nl", role = "cph"),
-    person("Brent", "Riechelman", email = 'brent.riechelman@nmi-agro.nl', role = "ctb"))
-Description: This package can be used to calculate the Open Bodem Index (OBI). 
-    The OBI is a tool that evaluate the soil of agricultural fields based on four main criteria: chemical, physical, biological and managment. 
+    person("Brent", "Riechelman", email = 'brent.riechelman@nmi-agro.nl', role = "ctb"),
+    person("Nutriënten Managment Instituut", email = "nmi@nmi-agro.nl", role = "cph"))
+Description: The Open Bodem Index (OBI) is a method to evaluate soils of agricultural fields. 
+    This score is base on four main criteria: chemical, physical, biological and managment.
     These four criteria consist of more than 21 indicators to get an comprehensive picture of the soil. 
+    The OBIC is an implementation of the the Open Bodem Index (OBI) and can be used to calculate the scores, indicators and derivatives that are used by the OBI
     More information about the Open Bodem Index can be found a https://www.openbodemindex.nl/.
 Depends:
     R (>= 3.5.0)
@@ -23,9 +24,12 @@ URL: https://github.com/AgroCares/Open-Bodem-Index-Calculator
 BugReports: https://github.com/AgroCares/Open-Bodem-Index-Calculator/issues
 Encoding: UTF-8
 LazyData: true
-RoxygenNote: 7.1.1
+RoxygenNote: 7.1.2
 Suggests: 
     testthat (>= 2.1.0),
     knitr,
-    rmarkdown
+    rmarkdown,
+    ggplot2,
+    patchwork,
+    covr
 VignetteBuilder: knitr