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Dev #26

Merged
merged 87 commits into from
May 2, 2024
Merged

Dev #26

merged 87 commits into from
May 2, 2024

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bfrosik
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@bfrosik bfrosik commented May 2, 2024

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jacione and others added 30 commits June 28, 2023 17:29
* Additional documentation for multipeak phasing

* Update setup.py

* Update meta.yaml

* Refactored get_centered to reduce number of numpy function calls.

* Added a bunch of functions to cplib.py

* Get strain from final reconstruction. This commit also contains commented code that would implement the partial fourier constraint with free-varying pixels according to a preset mask.

* Added several new methods to the cohlib signature:

- diff
- gradient
- argmin
- take_along_axis
- moveaxis
- lstsq
- zeros
- indices
- concatenate

These methods have been implemented in cplib and nplib, but will raise NotImplementedError if called from torchlib or aflib.

* Removed some experimental code that accidentally got included in this version.

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Co-authored-by: Barbara Frosik <[email protected]>
…into Dev

Conflicts:
	cohere_core/data/standard_preprocess.py
* changes for autodata option

* synch with ui

---------

Co-authored-by: bfrosik <[email protected]>
@bfrosik bfrosik merged commit 012ed8a into main May 2, 2024
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3 participants