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PySB import: Change default simplify to work with multiprocessing #1961

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Jan 27, 2023
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PySB import: Change default simplify to work with multiprocessing #1961

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PySB import: Change default simplify to work with multiprocessing
dweindl Jan 27, 2023
892b732
Merge branch 'develop' into fix_pysb_par_import
dweindl Jan 27, 2023
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5 changes: 3 additions & 2 deletions python/sdist/amici/pysb_import.py
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Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,8 @@
noise_distribution_to_observable_transformation)
from .logging import get_logger, log_execution_time, set_log_level
from .ode_export import (Constant, Expression, LogLikelihoodY, ODEExporter,
ODEModel, Observable, Parameter, SigmaY, State)
ODEModel, Observable, Parameter, SigmaY, State,
_default_simplify)

CL_Prototype = Dict[str, Dict[str, Any]]
ConservationLaw = Dict[str, Union[Dict, str, sp.Basic]]
Expand All @@ -46,7 +47,7 @@ def pysb2amici(
compiler: str = None,
compute_conservation_laws: bool = True,
compile: bool = True,
simplify: Callable = lambda x: sp.powsimp(x, deep=True),
simplify: Callable = _default_simplify,
# Do not enable by default without testing.
# See https://github.com/AMICI-dev/AMICI/pull/1672
cache_simplify: bool = False,
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