Update #86
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| name: Update | |
| on: | |
| schedule: | |
| - cron: '0 5 * * 1' | |
| push: | |
| branches: [main] | |
| jobs: | |
| run_script_and_update: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| permissions: | |
| contents: write | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| with: | |
| persist-credentials: true | |
| fetch-depth: 0 | |
| clean: true | |
| - name: Run checkupdate | |
| id: bashscript | |
| run: | | |
| bash ./checkupdate.sh | |
| - name: setup miniconda | |
| if: env.should_run_next_step == 'true' | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| auto-activate-base: false | |
| activate-environment: test | |
| auto-update-conda: true | |
| python-version: "3.11" | |
| environment-file: etc/example-environment.yml | |
| - name: Cache Conda env | |
| if: env.should_run_next_step == 'true' | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: | |
| conda-${{ runner.os }}--${{ runner.arch }}--${{ hashFiles('etc/example-environment.yml') }}-${{ env.CACHE_NUMBER }} | |
| env: | |
| CACHE_NUMBER: 0 | |
| id: cache | |
| - name: Update environment | |
| if: steps.cache.outputs.cache-hit != 'true' && env.should_run_next_step == 'true' | |
| run: | |
| mamba env update -n test -f etc/example-environment.yml | |
| - name: Install python dependencies | |
| if: env.should_run_next_step == 'true' | |
| run: | | |
| conda info | |
| echo "========================" | |
| conda list | |
| conda env list | |
| echo "========================" | |
| playwright install chrome chromium | |
| - name: Setup R | |
| if: env.should_run_next_step == 'true' | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.2.3' | |
| use-public-rspm: true | |
| - name: Cache R dependencies | |
| if: env.should_run_next_step == 'true' | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-R-${{ hashFiles('**/DESCRIPTION') }} | |
| restore-keys: | | |
| ${{ runner.os }}-R- | |
| - name: Setup R dependencies | |
| if: env.should_run_next_step == 'true' | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache: true | |
| cache-version: 1 | |
| - name: Run bash scripts | |
| if: env.should_run_next_step == 'true' | |
| run: | | |
| bash ./main.sh |